Information on SUBCLASS 5.5.1 |
Subclass Accession number: 721
Subclass: 5.5.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 18 Average sequence ID (%) : 8.9 +/- 11.6 Average RMSD (Å) : 0.706 +/- 0.213 Consensus geometry
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Consensus Sequence: | XXXXXXpXX |
(φψ)-conformation: | bbapglpbb |
Pattern: | x | x | x | x | x | x | [gks] | [adgknr] | [ehkqrsty] | x | x | x |
Conservation: | -0.365 | -0.562 | -0.274 | -0.258 | -0.297 | -0.434 | 2.492 | 1.343 | 0.597 | -0.841 | -0.512 | -0.891 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bfg_*_21 | 1bfg | - | 22 | 33 | RLYCKNGGFFLR | EEEETTTTEEEE | bbxxaxgvxxxb |
1dja_*_230 | 1dja | - | 235 | 246 | SGQAITYASRND | EEE-SSTT-EEE | xbbxabllxbbb |
1f1u_A_241 | 1f1u | A | 245 | 256 | PGRHGVSNAFYL | EEE-STT--EEE | wbbxaxvvxxbb |
1h8u_A_92 | 1h8u | A | 93 | 104 | VALCTRGGYWRR | EEEETTTT-EEE | bbbxabgvxxbx |
1jmx_A_462 | 1jmx | A | 467 | 478 | IATLADGGQTGE | EEEETTT--EEE | bbbpaxvvxxbb |
1jov_A_31 | 1jov | A | 33 | 44 | AKISLQGAQLIS | EEEETBTTEEEE | bbbxaxvlbpab |
1k32_A_477 | 1k32 | A | 481 | 492 | HVYDMEGRKIFA | EEEETTTTEEEE | bbbxaxglbbbx |
1k8k_A_254 | 1k8k | A | 257 | 268 | TGINAISKKEFS | EEE-TTT--EEE | bbbxabglbxbb |
1lur_A_1015 | 1lur | A | 1016 | 1027 | ATLLPFGATLAK | EEEETBTTEEEE | bbbbwxvlxxab |
1m2r_A_97 | 1m2r | A | 100 | 111 | IVRDQHSKTPSL | EEE-TTT--EEE | bbxpabNvxxbx |
1n0u_A_379 | 1n0u | A | 385 | 396 | MVPTSDKGRFYA | EEEBSSTT-EEE | bbxbaxlvxbbx |
1nsz_A_24 | 1nsz | A | 25 | 36 | ISFTNLGARIVD | EEEETBTTEEEE | bbbbaxvlbxab |
1o80_A_40 | 1o80 | A | 42 | 53 | IATMKKKGEKRC | EEEESSTT-EEE | bbbxaxUlxxbx |
1pgu_A_458 | 1pgu | A | 460 | 471 | AVGLEEGNTIQV | EEEETTTS-EEE | xbxxabvlxbbb |
1qfm_A_151 | 1qfm | A | 154 | 165 | KFMKVDGAKELP | EEEETTTTEEEE | bbbxaxvlxxba |
1snz_A_30 | 1snz | A | 31 | 42 | VDIISWGCTITA | EEEETBTTEEEE | bbbbaxvlxxab |
1tgo_A_431 | 1tgo | A | 431 | 442 | YDVAPQVGHKFC | EEE-TTT--EEE | bbbxabvlxbbx |
1vps_A_277 | 1vps | A | 288 | 299 | WRVTRNYDVHHW | EEE-SSTT-EEE | bbbxabllxxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HA.5.27 |
CLUSTER: HA.5.80 |
CLUSTER: HA.6.116 |
CLUSTER: HA.6.71 |
CLUSTER: HA.7.21 |