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Information on SUBCLASS 6.1.1
Subclass Accession number: 6427
Subclass: 6.1.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 69

Average sequence ID (%) : 50.4 +/- 27.5
Average RMSD (Å) : 0.319 +/- 0.200

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXXpXPhpF
(φψ)-conformation: bbaabpwpbb
Pattern: [CFGL]x[dnqs]x[adegknqst][ehknrst]x[P][flpvwy][AFKMT][FIKV]
Conservation:1.107-0.6940.177-0.705-0.817-0.367-0.8572.379-0.6360.0110.403
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a14_L_851a14   L8898CQQDFTLPFTFEEE-SSSS-EEbbbaabxwxbb
1axt_L_841axt   L8898CSQGTHVPYTFEEE-SSSS-EExbbaabxwxbb
1bm3_L_841bm3   L8898CQQSNSWPLTFEEE-SSSS-EEbbbaabbwxbb
1bww_A_861bww   A90100CQQYQSLPYTFEEE-SSSS-EEbbxaabxwxbb
1bz7_A_851bz7   A8898CQQGKTLPYTFEEE-SSSS-EEbbxaabpwxbb
1c5c_L_851c5c   L8898CLQYASFPRTFEEE-SSSS-EExbbaabxwpbb
1ce1_L_841ce1   L8898CLQHISRPRTFEEE-SSSS-EExbxaabxwxbx
1cfv_L_891cfv   L93103CSQSSHVPLTFEEE-SSSS-EExbbaabxwxbb
1cr9_L_841cr9   L8898CWQGTHFPHTVEEE-SSSS-EEbbbaabxwxbb
1ct8_A_841ct8   A8898CHQTHGRPLTFEEE-SSSS-EEbbbaabxwxbb
1cz8_L_841cz8   L8898CQQYSTVPWTFEEE-SSSS-EEbbxaabxwpbb
1d5i_L_841d5i   L8898CLQYDEFPYTFEEE-SSSS-EEbbxaabxwxbb
1dl2_A_4821dl2   A482492LSDCITLPTKKEEESSSSS-EEbabaaxbwxxx
1dlf_L_841dlf   L8898CSQSTHVPFTFEEE-SSSS-EExbbaabbwxbb
1dn0_A_861dn0   A8999CQQYGSSPLTFEEE-SSSS-EEbbbaabxwpbb
1dsf_L_841dsf   L8898CSQSTHVPLTFEEE-SSSS-EEbbbaabbwxbb
1dvf_C_851dvf   C8898CQQGNTLPWTFEEE-SSSS-EEbbxaabxwpbb
1dzb_A_2841dzb   A288298CLQHGESPYTFEEE-SSSS-EEbbxaabxwpbb
1e4w_L_851e4w   L8898CQQGGALPFTFEEE-SSSS-EExbxaabxwxbb
1eeq_A_841eeq   A8898CQQYYSHPYSFEEE-SSSS-EEbbbaabxwxbb
1ejo_L_20881ejo   L20922102CQQSNEDPLTFEEE-SSSS-EEbbbaabxwxbb
1ek3_A_841ek3   A8898CQQYYSTPPTFEEE-SSSS-EExbxaaxbwxbx
1emt_L_851emt   L8898CQQYSRLPFTFEEE-SSSS-EEbbbaabxwxbb
1f58_L_841f58   L8898CQQSHEDPLTFEEE-SSSS-EExbxaabxwxbb
1f8t_L_841f8t   L8898CVQGTHFPRTFEEE-SSSS-EEbbbaabxwxbb
1fe8_L_851fe8   L8898CQNGGTNPWTFEEE-SSSS-EExbxaabxwxbb
1fns_L_851fns   L8898CQQYEKLPWTFEEE-SSSS-EExbbaabxwxbb
1gaf_L_851gaf   L8898CLQYASYPRTFEEE-SSSS-EEbbxaabbwxbb
1h0d_A_831h0d   A8797CQQSKEVPLTFEEE-SSSS-EEbbbaabxwxbb
1hyx_L_851hyx   L8898CFQGSHVPPTFEEE-SSSS-EEbbbaabxwxbb
1i8k_A_841i8k   A8898CLQSFNVPLTFEEE-SSSS-EEbbbaabxwxbb
1igm_L_841igm   L8898CQQYQNLPLTFEEE-SSSS-EEbbxaabxwpbb
1iqw_L_881iqw   L92102CQQSNEDPRTFEEE-SSSS-EEbbbaabbwxbb
1j05_A_841j05   A8898CQQTNEDPYTFEEE-SSSS-EExbbaabxwpbb
1jfq_L_851jfq   L8898CQQGNALPRTFEEE-SSSS-EExbxaabxwxbb
1jhl_L_851jhl   L8898CQQHNEYPWTFEEE-SSSS-EExbxaabxwxbb
1jpa_A_6931jpa   A695705GVVTKSTPVMIEEE-SSSS-EEebbaabbwxbb
1jpt_L_841jpt   L8898CLQHGESPWTFEEE-SSSS-EExbxaabxwxbb
1k6q_L_841k6q   L8898CLQHGESPFTFEEE-SSSS-EEbbbaabxwxbx
1kel_L_891kel   L93103CFQGSHVPRTFEEE-SSSS-EExbbaabxwxbx
1l7t_L_891l7t   L93103CFDGSTVPPKFEEE-SSSS-EExbbaabbwxbx
1lk3_L_831lk3   L8797CQQSWNGPLTFEEE-SSSS-EEbbbaabxwxbb
1lo0_L_891lo0   L93103CFQGSHFPLAFEEE-SSSS-EEbbbaabxwxbb
1lo4_L_891lo4   L93103CFQGSHSPWTFEEE-SSSS-EExbbaabxwpbb
1lw3_A_1111lw3   A114124FKSMERDPPFVEEESSSSS-EEbbbaabbwpxb
1mam_L_841mam   L8898CQQGNTLPFTFEEE-SSSS-EEbbxaabxwxbb
1mex_L_851mex   L8898CQQYNSYPYTFEEE-SSSS-EExbbaabxwxbb
1mju_L_841mju   L8898CLQHLEYPFTFEEE-SSSS-EExbxaabxwxbb
1mlb_A_841mlb   A8898CQQSNSWPRTFEEE-SSSS-EEbbbaabxwxbb
1n4x_L_891n4x   L93103CFQGSHFPPTFEEE-SSSS-EExbbaabxwpbb
1n7m_H_851n7m   H8898CQQYSSYPLTFEEE-SSSS-EEbbbaabxwxbb
1ncw_L_841ncw   L8898CWQGTHFPYTFEEE-SSSS-EEbbbaabxwxbb
1p2c_A_841p2c   A8898CQQSGSWPRTFEEE-SSSS-EEbbbaabbwxbb
1qok_A_2441qok   A248258CQQRSSYPLTFEEE-SSSS-EEbbbaabxwpbb
1r3j_A_851r3j   A8898CQQSNRWPFTFEEE-SSSS-EEbbbaabxwxbb
1rhh_A_841rhh   A8898CQQYGTSPYTFEEE-SSSS-EEbbbaabxwxbb
1rih_L_841rih   L8898CQQSNRWPLTFEEE-SSSS-EEbbxaabxwxbb
1rur_L_841rur   L8898CAQNLELPYTFEEE-SSSS-EExbbaabxwxbb
1sbs_L_901sbs   L94104CQQYHSYPFTFEEE-SSSS-EEbbxaabxwxbb
1tet_L_841tet   L8898CFQGSHIPFTFEEE-SSSS-EEbbbaabxwxbb
1uac_L_851uac   L8898CQQSNSWPYTFEEE-SSSS-EEbbbaabxwpbb
1ucb_L_841ucb   L8898CFQGSHVPFTFEEE-SSSS-EEbbbaabxwxbb
1vge_L_841vge   L8898CQQFNSYPLTFEEE-SSSS-EEbbxaabxwxbb
1wtl_A_841wtl   A8898CQQYDTLPLTFEEE-SSSS-EEbbxaabxwxbb
2h1p_L_902h1p   L93103CSQSTHVPWTFEEE-SSSS-EEbbbaabxwxbb
2hrp_L_842hrp   L8898CQQSKEVPWTFEEE-SSSS-EExbbaabbwxbb
2imn_*_842imn   -8898CQNDHSYPLTFEEE-SSSS-EEbbxaabxwxbx
2pcp_A_842pcp   A8898CFQGTHAPYTFEEE-SSSS-EEbbbaabbwxxb
35c8_L_8435c8   L8898CHQYHRSPYTFEEE-SSSS-EExbbaabxwxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c5c_L_851c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID L - 89
1c5c_L_851c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID Q - 90
1c5c_L_851c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID Y - 91
1c5c_L_851c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID F - 94
1c5c_L_851c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID R - 96
1cfv_L_891cfv   L     E3GESTRONE BETA-D-GLUCURONIDE S - 96
1cfv_L_891cfv   L     ZNZINC ION S - 97
1cfv_L_891cfv   L     ZNZINC ION H - 98
1cfv_L_891cfv   L     E3GESTRONE BETA-D-GLUCURONIDE H - 98
1cfv_L_891cfv   L     ZNZINC ION V - 99
1cfv_L_891cfv   L     E3GESTRONE BETA-D-GLUCURONIDE V - 99
1cfv_L_891cfv   L     E3GESTRONE BETA-D-GLUCURONIDE P - 100
1cfv_L_891cfv   L     E3GESTRONE BETA-D-GLUCURONIDE L - 101
1cfv_L_891cfv   L     ZNZINC ION T - 102
1ct8_A_841ct8   A     TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER H - 89
1ct8_A_841ct8   A     TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER T - 91
1ct8_A_841ct8   A     TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER H - 92
1ct8_A_841ct8   A     TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER G - 93
1ct8_A_841ct8   A     TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER R - 94
1ct8_A_841ct8   A     TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER L - 96
1d5i_L_841d5i   L     CDCADMIUM ION D - 92
1d5i_L_841d5i   L     CD1CADMIUM ION, 1 WATER COORDINATED D - 92
1d5i_L_841d5i   L     CDCADMIUM ION E - 93
1d5i_L_841d5i   L     CD1CADMIUM ION, 1 WATER COORDINATED E - 93
1f58_L_841f58   L     AIBALPHA-AMINOISOBUTYRIC ACID D - 94
1gaf_L_851gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID L - 89
1gaf_L_851gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID Y - 91
1gaf_L_851gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID Y - 94
1gaf_L_851gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID R - 96
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER F - 89
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Q - 90
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER G - 91
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER S - 92
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER H - 93
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER V - 94
1hyx_L_851hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER P - 96
1j05_A_841j05   A     GOLGLYCEROL Y - 86
1jpa_A_6931jpa   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 707
1jpa_A_6931jpa   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 708
1kel_L_891kel   L     AAH1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID F - 94
1kel_L_891kel   L     AAH1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID Q - 95
1kel_L_891kel   L     AAH1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID G - 96
1kel_L_891kel   L     AAH1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID S - 97
1kel_L_891kel   L     AAH1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID H - 98
1kel_L_891kel   L     AAH1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID R - 101
1lo0_L_891lo0   L     BC13-{[(9-CYANO-9,10-DIHYDRO-10-METHYLACRIDIN-9-YL) CARBONYL]AMINO}PROPANOIC ACID G - 96
1lo0_L_891lo0   L     BC13-{[(9-CYANO-9,10-DIHYDRO-10-METHYLACRIDIN-9-YL) CARBONYL]AMINO}PROPANOIC ACID F - 99
1mex_L_851mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID Q - 89
1mex_L_851mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID Y - 91
1mex_L_851mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID Y - 96
1mex_L_851mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID F - 98
1mju_L_841mju   L     GOLGLYCEROL H - 91
1n7m_H_851n7m   H     MMPN-METHYLMESOPORPHYRIN Q - 89
1n7m_H_851n7m   H     MMPN-METHYLMESOPORPHYRIN Y - 91
1n7m_H_851n7m   H     MMPN-METHYLMESOPORPHYRIN Y - 94
1n7m_H_851n7m   H     MMPN-METHYLMESOPORPHYRIN L - 96
1ncw_L_841ncw   L     BEZBENZOIC ACID W - 89
1ncw_L_841ncw   L     BEZBENZOIC ACID Q - 90
1ncw_L_841ncw   L     BEZBENZOIC ACID G - 91
1ncw_L_841ncw   L     BEZBENZOIC ACID T - 92
1ncw_L_841ncw   L     BEZBENZOIC ACID Y - 96
1tet_L_841tet   L     CITCITRIC ACID S - 92
1tet_L_841tet   L     CITCITRIC ACID H - 93
1tet_L_841tet   L     CITCITRIC ACID I - 94
2pcp_A_842pcp   A     1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE F - 89
2pcp_A_842pcp   A     1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE Q - 90
2pcp_A_842pcp   A     1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE G - 91
2pcp_A_842pcp   A     1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE T - 92
2pcp_A_842pcp   A     1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE Y - 96
35c8_L_8435c8   L     NOXN-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE H - 89
35c8_L_8435c8   L     NOXN-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE Y - 91
35c8_L_8435c8   L     NOXN-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE Y - 96
35c8_L_8435c8   L     NOXN-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE F - 98

Clusters included in this Subclass
CLUSTER: HA.5.8
CLUSTER: HA.6.7