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Information on SUBCLASS 6.2.1
Subclass Accession number: 6428
Subclass: 6.2.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 15.3 +/- 17.7
Average RMSD (Å) : 0.668 +/- 0.380

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXpXXpXXXX
(φψ)-conformation: bbpaaalpbb
Pattern: x[acdstv]x[adegns]xx[cdhnst][egnqrs]xxxxx
Conservation:-0.797-0.048-0.1080.831-0.412-1.1882.4771.105-0.001-1.189-0.012-0.116-0.543
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a06_*_341a06   -3648LAEDKRTQKLVAIEEEETTT--EEEExbbxaaavxxbbb
1cm8_A_411cm8   A4355SAVDGRTGAKVAIEEEETTT--EEEEbbbxaaagxxbbb
1dp4_A_3761dp4   A379391WDMDPETGAFRVVEEE-TTT--EEEEbbxxaaavxbbxa
1h8d_H_1981h8d   H200212VMKSPFNNRWYQMEEE-TTT--EEEEbbbpaaalbxbxa
1inp_*_1961inp   -206218VSQDLHTRRWKGQEEE-TTT--EEEEabbxaaaUxxbbb
1ivw_A_3421ivw   A354366KHSDLWSGINYTREEE-TTT--EEEEbbbxaaavxbbbb
1jj2_Z_161jj2   Z1628HTKCRRCGEKSYHEEE-TTT-SEEEExbpxaaavxxaxx
1jks_A_251jks   A2941KCREKSTGLQYAAEEEETTT--EEEExbbxaaavxxbbx
1jou_B_1981jou   B200212VMKSPFNNRWYQMEEE-TTTS-EEEEbbbxaaavbxbxa
1jwi_B_971jwi   B99111FVAESFHNKWIQWEEEETTT--EEEEbbbxaaavxbbxb
1khi_A_511khi   A5870ISTSAATGQHRYLEEE-TTT--EEEEbbbxaaavxxbbb
1kob_A_651kob   A6981RCVEKATGRVFVAEEEETTT--EEEExbbxaaavxxbbb
1ky8_A_331ky8   A3547EVKSPIDLATIAKEEE-TTT--EEEExbbxaaavxxabb
1mda_H_941mda   H99111EVFDPVTFLPIADEEE-TTT--EEEEbbbxaaavxxabb
1nvr_A_211nvr   A2537LAVNRVTEEAVAVEEEETTT--EEEExbbxaaavxbbxb
1o6l_A_1641o6l   A168180LVREKATGRYYAMEEEETTT--EEEExbbxaaavxxbbb
1p5t_A_351p5t   A3951LTLGAQSQILEPLEEE-TTT-SEEEEbbxxaaalbxbwa
1pgs_*_621pgs   -6678YVKNKTTGEWYEIEEE-TTT--EEEEbbxxaaavxxbxa
1q41_A_701q41   A7284QAKLCDSGELVAIEEEETTT--EEEEbbbxaaavxxbbb
1rdq_E_561rdq   E5971LVKHKESGNHYAMEEEETTT--EEEExbbxaaavxxbbx
1ri6_A_611ri6   A6577YRIAPDDGALTFAEEE-TTT--EEEEbxbxaaavpbbpa
1uu3_A_951uu3   A98110LARELATSREYAIEEEETTT--EEEExbbxaaavxxbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cm8_A_411cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 41
1cm8_A_411cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 54
1cm8_A_411cm8   A     MGMAGNESIUM ION K - 56
1cm8_A_411cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 56
1ivw_A_3421ivw   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE K - 354
1ivw_A_3421ivw   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE H - 355
1ivw_A_3421ivw   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE T - 377
1jj2_Z_161jj2   Z     CDCADMIUM ION C - 19
1jj2_Z_161jj2   Z     CDCADMIUM ION R - 20
1jj2_Z_161jj2   Z     CDCADMIUM ION R - 21
1jj2_Z_161jj2   Z     CDCADMIUM ION C - 22
1jj2_Z_161jj2   Z     CDCADMIUM ION G - 23
1jj2_Z_161jj2   Z     CDCADMIUM ION E - 24
1jj2_Z_161jj2   Z     CDCADMIUM ION S - 26
1jj2_Z_161jj2   Z     CDCADMIUM ION Y - 27
1nvr_A_211nvr   A     STUSTAUROSPORINE V - 23
1nvr_A_211nvr   A     STUSTAUROSPORINE A - 36
1nvr_A_211nvr   A     STUSTAUROSPORINE K - 38
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 164
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 166
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 179
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 181
1o6l_A_1641o6l   A     MNMANGANESE (II) ION K - 181
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 183
1p5t_A_351p5t   A     MSESELENOMETHIONINE K - 35
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME V - 70
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME A - 83
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME K - 85
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE R - 56
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE R - 56
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE V - 57
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE V - 57
1rdq_E_561rdq   E     GOLGLYCEROL K - 63
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE A - 70
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE A - 70
1rdq_E_561rdq   E     PO4PHOSPHATE ION K - 72
1rdq_E_561rdq   E     MGMAGNESIUM ION K - 72
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE K - 72
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE K - 72
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE L - 74
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE L - 74
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE T - 95
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE V - 96
1uu3_A_951uu3   A     GOLGLYCEROL R - 106
1uu3_A_951uu3   A     GOLGLYCEROL E - 107
1uu3_A_951uu3   A     GOLGLYCEROL Y - 108
1uu3_A_951uu3   A     GOLGLYCEROL A - 109
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE A - 109
1uu3_A_951uu3   A     GOLGLYCEROL K - 111
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE K - 111
1uu3_A_951uu3   A     GOLGLYCEROL I - 112
1uu3_A_951uu3   A     GOLGLYCEROL L - 113
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o6l_A_1641o6l   A AC1ANP BINDING SITE FOR CHAIN AA - 179
1o6l_A_1641o6l   A AC1ANP BINDING SITE FOR CHAIN AK - 181
1uu3_A_951uu3   A AC1LY4 BINDING SITE FOR CHAIN AA - 109
1uu3_A_951uu3   A AC1LY4 BINDING SITE FOR CHAIN AK - 111

Clusters included in this Subclass
CLUSTER: HA.6.20
CLUSTER: HA.7.70