Information on SUBCLASS 6.40.1 |
Subclass Accession number: 6475
Subclass: 6.40.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.7 (>50 %) 1.7.2 (>50 %) 1.7.2.1 GO : GO:0005507 (>75 %) GO:0016661 (>50 %) GO:0016662 (>50 %) GO:0046914 (>75 %) GO:0050421 (>50 %) SCOP : 49502 (>75 %) 49503 (>75 %) 49550 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 76.5 +/- -38.1 Average RMSD (Å) : 0.233 +/- 0.058 Consensus geometry
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Consensus Sequence: | hVIDpXGTph |
(φψ)-conformation: | bbabaalpbb |
Pattern: | [V] | [V] | [E] | [F] | [T] | [M] | [TV] | [I] | [E] | [E] | [K] | [K] | [ILM] | [V] | [I] | [D] | [DR] | [AEK] | [G] | [T] | [ET] | [ILV] | [HQ] | [A] | [M] | [AT] | [F] |
Conservation: | -0.095 | -0.095 | 0.627 | 1.349 | 0.627 | 0.627 | -1.304 | -0.095 | 0.627 | 0.627 | 0.627 | 0.627 | -1.137 | -0.095 | -0.095 | 1.349 | -1.639 | -2.020 | 1.349 | 0.627 | -1.516 | -1.057 | -0.500 | -0.095 | 0.627 | -1.304 | 1.349 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j9q_A_38 | 1j9q | A | 38 | 64 | VVEFTMVIEEKKIVIDDAGTEVHAMAF | EEEEEEEEEEEEEE-STT--EEEEEEE | bxbbbbbxbxbxbbabaavxbbxxbbx |
1nif_*_38 | 1nif | - | 38 | 64 | VVEFTMTIEEKKLVIDREGTEIHAMTF | EEEEEEEEEEEEEE-STT--EEEEEEE | bxbbbbbxbxbxbxabaavpbbxxbbb |
1oe1_A_32 | 1oe1 | A | 32 | 58 | VVEFTMTIEEKKMVIDDKGTTLQAMTF | EEEEEEEEEEEEEE-STT--EEEEEEE | xbxbbbbxbxbxbxabaavxbbxxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j9q_A_38 | 1j9q | A | CUCOPPER (II) ION | I - 45 |
1j9q_A_38 | 1j9q | A | CUCOPPER (II) ION | M - 62 |
1j9q_A_38 | 1j9q | A | CUCOPPER (II) ION | F - 64 |
1oe1_A_32 | 1oe1 | A | CUCOPPER (II) ION | I - 39 |
1oe1_A_32 | 1oe1 | A | CUCOPPER (II) ION | M - 56 |
Clusters included in this Subclass |
CLUSTER: HA.5.176 |