ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.3.1

Subclass Accession number: 6518
Subclass: 8.3.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 20.6 +/- 22.1
Average RMSD (Å) : 0.860 +/- 0.381

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XXhXXpXGppXX
(φψ)-conformation:	bpabappgppbb

Pattern:	[ailt]	x	[akqrst]	[acfgvy]	[ADGS]	x	[AEGKNST]	[ADENPQ]	[GR]	x	x	[aiklv]	x	[ILP]
Conservation:	0.003	-0.467	-0.583	-1.023	0.984	-0.851	-0.084	0.029	2.980	0.065	-0.580	-0.298	-0.517	0.343

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1abr_B_191	1abr	B	196	209	LTSKDHKQGSTILL	EEESSSSTT-BEEE	xbbabaxxgpxbbb
1abr_B_67	1abr	B	69	82	LTTYGYAPGSYVMI	EEES-SSTT-BEEE	xbxababpgxxbbx
1bkz_A_32	1bkz	A	35	48	NLLCGEEQGSDAAL	EEES-SSTT--EEE	bbxabaxxvpxbab
1eys_H_89	1eys	H	89	102	ATPFSPAPGSPLVP	EEESSSSTT--EEE	bbpabaxxvxxbxx
1io1_A_141	1io1	A	144	157	TIQVGANDGETIDI	EEE-SSSTT-EEEE	xbxababpvxbbbb
1knm_A_58	1knm	A	60	73	LDAAGTSNGSKVQI	EEES-SSTT-BEEE	pbxababpvxxbbb
1m2t_B_310	1m2t	B	312	325	LTTYGYTAGVYVMI	EEES-SSTT-BEEE	xbxababpvxxbbx
1rzh_H_87	1rzh	H	87	100	LARTAVSEGFPHAP	EEESSSSTTS-EEE	bbpababxvbxbxx
1v6w_A_364	1v6w	A	366	379	LDAAGTGNGTKVQI	EEESSSSTT-BEEE	xbbaxaxxvpxbbb
1wba_*_116	1wba	-	120	133	IQKGSNTPRTYKLL	EEE-SSSTT-EEEE	bbpabaxpvbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1knm_A_58	1knm	A	LATLACTOSE	G - 68
1m2t_B_310	1m2t	B	GOLGLYCEROL	T - 313
1m2t_B_310	1m2t	B	GOLGLYCEROL	T - 314
1m2t_B_310	1m2t	B	GOLGLYCEROL	Y - 315
1m2t_B_310	1m2t	B	GOLGLYCEROL	Y - 317
1m2t_B_310	1m2t	B	GOLGLYCEROL	M - 324
1m2t_B_310	1m2t	B	GOLGLYCEROL	F - 326

Clusters included in this Subclass

CLUSTER: HA.7.37

CLUSTER: HA.8.12