Information on SUBCLASS 8.4.1 |
Subclass Accession number: 6519
Subclass: 8.4.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 9 Average sequence ID (%) : 49.9 +/- 28.8 Average RMSD (Å) : 0.789 +/- 0.285 Consensus geometry
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Consensus Sequence: | hCphPGHhXhhX |
(φψ)-conformation: | bbappgaaaabb |
Pattern: | [ny] | [agly] | [fy] | [fiv] | [c] | [qst] | [fiy] | [p] | [g] | [h] | [acfiwy] | [ags] | [aglmt] | [gm] | [kmqr] | [fgk] | [gitv] | [akltv] | [iklt] | [ltv] |
Conservation: | 0.334 | -0.922 | 0.816 | -0.181 | 2.233 | -0.249 | 0.196 | 1.539 | 1.192 | 1.886 | -0.729 | -0.643 | -0.823 | -0.417 | -0.393 | -0.789 | -0.811 | -0.773 | -0.768 | -0.698 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1azc_A_108 | 1azc | A | 108 | 127 | YAYFCSFPGHWAMMKGTLKL | EEEE--STTTTTTSEEEEEE | bbbbbaxpvaaaabbbbbbx |
1cuo_A_108 | 1cuo | A | 108 | 127 | YTYFCSYPGHFSMMRGTLKL | EEEE--STT-TTTSEEEEEE | bbbbxappvaaaaxbbbbbx |
1dyz_A_108 | 1dyz | A | 108 | 127 | YAYFCSFPGHWAMMKGTLKL | EEEE--STTGGGTSEEEEEE | bbbbxaxpvaaaabbbbbbx |
1e30_A_132 | 1e30 | A | 134 | 153 | YYYVCQIPGHAATGQFGKIV | EEEE--STTTTTTT-EEEEE | bbbbxaxpvaaaagxbbbbb |
1f56_A_68 | 1f56 | A | 70 | 89 | NYFICSFPGHCGGGMKIAIN | EEEE--STTTTTTT-EEEEE | bbbbbaxpvaaaagxbbbbx |
1joi_*_108 | 1joi | - | 108 | 127 | YAFFCSFPGHISMMKGTVTV | EEEE--STTGGGTSEEEEEE | bbbbbaxpvaaaabbbbbbx |
1nwp_A_108 | 1nwp | A | 108 | 127 | YGFFCSFPGHISMMKGTVTL | EEEE--STT-GGGSEEEEEE | bbbbbaxpvaaaabbbbbbx |
1qhq_A_116 | 1qhq | A | 118 | 137 | YLYICTFPGHYLAGMKGTLT | EEEE--STTTTTTT-EEEEE | bxbbbaxpgaaaagxbbbxb |
1rkr_A_108 | 1rkr | A | 108 | 127 | YAYFCSFPGHFALMKGVLKL | EEEE--STTGGGTSEEEEEE | bbbbbaxpvaaaaxbbbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1azc_A_108 | 1azc | A | CUCOPPER (II) ION | C - 112 |
1azc_A_108 | 1azc | A | CUCOPPER (II) ION | S - 113 |
1azc_A_108 | 1azc | A | CUCOPPER (II) ION | F - 114 |
1azc_A_108 | 1azc | A | CUCOPPER (II) ION | H - 117 |
1azc_A_108 | 1azc | A | CUCOPPER (II) ION | M - 121 |
1cuo_A_108 | 1cuo | A | CUCOPPER (II) ION | Y - 114 |
1e30_A_132 | 1e30 | A | CUCOPPER (II) ION | C - 138 |
1e30_A_132 | 1e30 | A | CUCOPPER (II) ION | Q - 139 |
1e30_A_132 | 1e30 | A | CUCOPPER (II) ION | I - 140 |
1e30_A_132 | 1e30 | A | CUCOPPER (II) ION | H - 143 |
1e30_A_132 | 1e30 | A | CUCOPPER (II) ION | A - 144 |
1e30_A_132 | 1e30 | A | CUCOPPER (II) ION | Q - 148 |
1f56_A_68 | 1f56 | A | CU1COPPER (I) ION | C - 74 |
1f56_A_68 | 1f56 | A | CU1COPPER (I) ION | S - 75 |
1f56_A_68 | 1f56 | A | CU1COPPER (I) ION | F - 76 |
1f56_A_68 | 1f56 | A | CU1COPPER (I) ION | H - 79 |
1f56_A_68 | 1f56 | A | CU1COPPER (I) ION | M - 84 |
1qhq_A_116 | 1qhq | A | CUCOPPER (II) ION | C - 122 |
1qhq_A_116 | 1qhq | A | CUCOPPER (II) ION | T - 123 |
1qhq_A_116 | 1qhq | A | CUCOPPER (II) ION | F - 124 |
1qhq_A_116 | 1qhq | A | CUCOPPER (II) ION | H - 127 |
1qhq_A_116 | 1qhq | A | CUCOPPER (II) ION | M - 132 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1dyz_A_108 | 1dyz | A | CU1TYPE 1 COPPER SITE | C - 112 |
1dyz_A_108 | 1dyz | A | CU1TYPE 1 COPPER SITE | H - 117 |
1dyz_A_108 | 1dyz | A | CU1TYPE 1 COPPER SITE | M - 121 |
1e30_A_132 | 1e30 | A | CUACU SITE CHAIN A | C - 138 |
1e30_A_132 | 1e30 | A | CUACU SITE CHAIN A | H - 143 |
1e30_A_132 | 1e30 | A | CUACU SITE CHAIN A | Q - 148 |
1qhq_A_116 | 1qhq | A | CUTYPE I BLUE COPPER SITE | C - 122 |
1qhq_A_116 | 1qhq | A | CUTYPE I BLUE COPPER SITE | H - 127 |
1qhq_A_116 | 1qhq | A | CUTYPE I BLUE COPPER SITE | M - 132 |
Clusters included in this Subclass |
CLUSTER: HA.10.6 |