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Information on SUBCLASS 0.1.13
Subclass Accession number: 13
Subclass: 0.1.13 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 8.6 +/- 11.4
Average RMSD (Å) : 0.611 +/- 0.215

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: ppXX
(φψ)-conformation: aabb
Pattern: [ekqt]xx[acfklt][EKQST][aknrst]xx[aglptv]
Conservation:1.597-0.519-0.466-0.8411.7490.229-0.384-0.500-0.864
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f14_A_741f14   A8290EKTLSTIATHHHHHTEEEaaaaaabxb
1gpe_A_1371gpe   A142150EYMKKAEAAHHHHHTEEEaaaaaabbx
1h7s_A_2331h7s   A233241QKQLQSLIPHHHHHTEEEaaaaaabbx
1lml_*_1601lml   -166174QLHTERLKVHHHHTTEEEaaaaaabbb
1mg7_A_2071mg7   A207215EHFNKKHDLHHHHHHEEEaaaaaabbx
1mj4_A_681mj4   A7280ELLAQYKIGHHHHTTEEEaaaaaaxae
1p1j_A_4381p1j   A453461TEFCTRVSYHHHHHTEEEaaaaaabbb
1sbp_*_1521sbp   -160168KALFKNVEVHHHHHTEEEaaaaaaxab
2pva_A_1162pva   A120128IEKLTSYTLHHHHTTEEEaaaaaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gpe_A_1371gpe   A     NAGN-ACETYL-D-GLUCOSAMINE F - 141
1gpe_A_1371gpe   A     NAGN-ACETYL-D-GLUCOSAMINE K - 145
1h7s_A_2331h7s   A     MSESELENOMETHIONINE I - 240
1h7s_A_2331h7s   A     MSESELENOMETHIONINE P - 241
1mj4_A_681mj4   A     SULSULFATE ANION S - 68
1mj4_A_681mj4   A     SULSULFATE ANION H - 69
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 69
1mj4_A_681mj4   A     GOLGLYCEROL H - 69
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 70
1mj4_A_681mj4   A     GOLGLYCEROL V - 70
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 73
1mj4_A_681mj4   A     GOLGLYCEROL L - 73
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 74
1p1j_A_4381p1j   A     PO4PHOSPHATE ION D - 438
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE D - 438
1p1j_A_4381p1j   A     CRYPROPANE-1,2,3-TRIOL D - 438
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE S - 439
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE L - 441
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE A - 442

Clusters included in this Subclass
CLUSTER: HE.0.11
CLUSTER: HE.1.30
CLUSTER: HE.2.38