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Information on SUBCLASS 0.1.13
Subclass Accession number: 5200
Subclass: 0.1.13 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 8.7 +/- 11.6
Average RMSD (Å) : 0.462 +/- 0.104

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 0-45 rho (°): 135-180
Consensus Sequence: pXXX
(φψ)-conformation: aabb
Pattern: xxxx[dehrsty]xxxx
Conservation:-0.3851.439-0.515-1.049-0.2760.8131.496-1.135-0.389
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e4y_A_1151e4y   A117125VDRIVGRRVHHHHHTEEEaaaaaabbb
1f14_A_741f14   A8290EKTLSTIATHHHHHTEEEaaaaaabxb
1hbn_A_921hbn   A98106WDDIRRTVIHHHHHTEEEaaaaaabbb
1hc7_A_3771hc7   A398406AFREDHTRKHHHHHTEEEaaaaaabbx
1ih7_A_1801ih7   A180188SEIIDKIIYHHHHTTEEEaaaaaaxbx
1jj2_I_921jj2   I95103REAFESVRVHHHHHTEEEaaaaaabbb
1k4t_A_3211k4t   A334342LLKEYGFCIHHHHHSEEEaaaaaabbb
1m6i_A_2751m6i   A275283AEVKSRTTLHHHHHTEEEaaaaaabbb
1p3w_A_3461p3w   A346354DELAHSSIRHHHHHTEEEaaaaaabbb
1pzx_A_1431pzx   A151159ESYCRHMEHHHHHHTEEEaaaaaaxbb
1rif_A_191rif   A2432ELRDFFSFEHHHHHTEEEaaaaaabbx
1un8_A_1721un8   A180188QYAASNTFSHHHHHTEEEaaaaaabbb
1zin_*_1171zin   -121129MERLTGRRIHHHHHTEEEaaaaaaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4y_A_1151e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 119
1e4y_A_1151e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 120
1e4y_A_1151e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 122
1e4y_A_1151e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 123
1e4y_A_1151e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 124
1hbn_A_921hbn   A     ZNZINC ION R - 102
1pzx_A_1431pzx   A     PLMPALMITIC ACID H - 159
1pzx_A_1431pzx   A     PLMPALMITIC ACID F - 161
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 124
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 126
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 127
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 128
1zin_*_1171zin   *     ZNZINC ION C - 130
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4y_A_1151e4y   A AC1AP5 BINDING SITE FOR CHAIN AR - 119
1e4y_A_1151e4y   A AC1AP5 BINDING SITE FOR CHAIN AR - 123

Clusters included in this Subclass
CLUSTER: HE.1.28
CLUSTER: HE.2.53