Information on SUBCLASS 0.1.13 |
Subclass Accession number: 5200
Subclass: 0.1.13 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 13 Average sequence ID (%) : 8.7 +/- 11.6 Average RMSD (Å) : 0.462 +/- 0.104 Consensus geometry
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Consensus Sequence: | pXXX |
(φψ)-conformation: | aabb |
Pattern: | x | x | x | x | [dehrsty] | x | x | x | x |
Conservation: | -0.385 | 1.439 | -0.515 | -1.049 | -0.276 | 0.813 | 1.496 | -1.135 | -0.389 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e4y_A_115 | 1e4y | A | 117 | 125 | VDRIVGRRV | HHHHHTEEE | aaaaaabbb |
1f14_A_74 | 1f14 | A | 82 | 90 | EKTLSTIAT | HHHHHTEEE | aaaaaabxb |
1hbn_A_92 | 1hbn | A | 98 | 106 | WDDIRRTVI | HHHHHTEEE | aaaaaabbb |
1hc7_A_377 | 1hc7 | A | 398 | 406 | AFREDHTRK | HHHHHTEEE | aaaaaabbx |
1ih7_A_180 | 1ih7 | A | 180 | 188 | SEIIDKIIY | HHHHTTEEE | aaaaaaxbx |
1jj2_I_92 | 1jj2 | I | 95 | 103 | REAFESVRV | HHHHHTEEE | aaaaaabbb |
1k4t_A_321 | 1k4t | A | 334 | 342 | LLKEYGFCI | HHHHHSEEE | aaaaaabbb |
1m6i_A_275 | 1m6i | A | 275 | 283 | AEVKSRTTL | HHHHHTEEE | aaaaaabbb |
1p3w_A_346 | 1p3w | A | 346 | 354 | DELAHSSIR | HHHHHTEEE | aaaaaabbb |
1pzx_A_143 | 1pzx | A | 151 | 159 | ESYCRHMEH | HHHHHTEEE | aaaaaaxbb |
1rif_A_19 | 1rif | A | 24 | 32 | ELRDFFSFE | HHHHHTEEE | aaaaaabbx |
1un8_A_172 | 1un8 | A | 180 | 188 | QYAASNTFS | HHHHHTEEE | aaaaaabbb |
1zin_*_117 | 1zin | - | 121 | 129 | MERLTGRRI | HHHHHTEEE | aaaaaaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e4y_A_115 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 119 |
1e4y_A_115 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | I - 120 |
1e4y_A_115 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | G - 122 |
1e4y_A_115 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 123 |
1e4y_A_115 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 124 |
1hbn_A_92 | 1hbn | A | ZNZINC ION | R - 102 |
1pzx_A_143 | 1pzx | A | PLMPALMITIC ACID | H - 159 |
1pzx_A_143 | 1pzx | A | PLMPALMITIC ACID | F - 161 |
1zin_*_117 | 1zin | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | L - 124 |
1zin_*_117 | 1zin | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | G - 126 |
1zin_*_117 | 1zin | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 127 |
1zin_*_117 | 1zin | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 128 |
1zin_*_117 | 1zin | * | ZNZINC ION | C - 130 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4y_A_115 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | R - 119 |
1e4y_A_115 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | R - 123 |
Clusters included in this Subclass |
CLUSTER: HE.1.28 |
CLUSTER: HE.2.53 |