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Information on SUBCLASS 0.1.30
Subclass Accession number: 30
Subclass: 0.1.30 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 22.9 +/- 19.1
Average RMSD (Å) : 0.567 +/- 0.208

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXp
(φψ)-conformation: aabp
Pattern: [KY][GLV]xxx[LW][AFG]x[FL][L][S]x[DEQ]x[ER][NV]
Conservation:0.375-1.046-1.046-0.788-0.8740.467-0.702-0.5300.6441.8791.879-0.9600.846-0.5300.834-0.447
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dlj_A_101dlj   A1025YVGLSLGVLLSLQNEVHHHHHHHHHHTTTSEEaaaaaaaaaaaaabxb
1j9j_A_141j9j   A1429KGIIVLAELLSEEHEVHHHHHHHHHHTTTSEEaaaaaaaaaaaaabxb
1obd_A_531obd   A5974KLSEFWFKFLSNDVRNHHHHHHHHHTTTT-EEaaaaaaaaaaaaabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 10
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 11
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 12
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 28
1obd_A_531obd   A     MGMAGNESIUM ION L - 57
1obd_A_531obd   A     MGMAGNESIUM ION T - 58
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE K - 59
1obd_A_531obd   A     MGMAGNESIUM ION S - 61
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE E - 62
1obd_A_531obd   A     MGMAGNESIUM ION F - 65
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_531obd   A AC6MG BINDING SITE FOR CHAIN AS - 61
1obd_A_531obd   A AC7AMP BINDING SITE FOR CHAIN AE - 62
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AR - 73
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AN - 74

Clusters included in this Subclass
CLUSTER: HE.5.219