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Information on SUBCLASS 0.1.34
Subclass Accession number: 34
Subclass: 0.1.34 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>50 %)  3.4 (>75 %)  3.4.22 (>75 %)  
GO : GO:0004175 (>75 %)  GO:0004197 (>75 %)  GO:0008233 (>75 %)  GO:0008234 (>75 %)  
SCOP : 54000 (>75 %)  54001 (>75 %)  54002 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 9.8 +/- 10.3
Average RMSD (Å) : 0.533 +/- 0.153

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXX
(φψ)-conformation: aabp
Pattern: [KRY][LPV][AGS]xx[LWY][AFG]x[AFL]x[S]x[DQY][ANV][EPR][NV]x
Conservation:0.226-0.5360.608-0.790-0.4091.116-0.663-0.790-0.4090.1923.149-0.409-0.155-0.917-0.028-0.185-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dlj_A_101dlj   A1026YVGLSLGVLLSLQNEVTHHHHHHHHHHTTTSEEEaaaaaaaaaaaaabxbb
1obd_A_531obd   A5974KLSEFWFKFLSNDVRN.HHHHHHHHHTTTT-EE.aaaaaaaaaaaaabxb.
1qe3_A_3641qe3   A365381RPAVAYASAQSHYAPVWHHHHHHHHHHTTTS-EEaaaaaaaaaaaaabwbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 10
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 11
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 12
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 28
1obd_A_531obd   A     MGMAGNESIUM ION L - 57
1obd_A_531obd   A     MGMAGNESIUM ION T - 58
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE K - 59
1obd_A_531obd   A     MGMAGNESIUM ION S - 61
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE E - 62
1obd_A_531obd   A     MGMAGNESIUM ION F - 65
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_531obd   A AC6MG BINDING SITE FOR CHAIN AS - 61
1obd_A_531obd   A AC7AMP BINDING SITE FOR CHAIN AE - 62
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AR - 73
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AN - 74

Clusters included in this Subclass
CLUSTER: HE.4.111