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Information on SUBCLASS 0.1.38
Subclass Accession number: 38
Subclass: 0.1.38 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.14 (>75 %)  1.14.14 (>50 %)  1.14.14.1
GO : GO:0003677 (>50 %)  GO:0003916 (>50 %)  GO:0003918 (>50 %)  GO:0004497 (>50 %)  GO:0016705 (>50 %)  GO:0016712 (>50 %)  GO:0016853 (>50 %)  GO:0050381 (>50 %)  
SCOP : 48263 (>75 %)  48264 (>75 %)  48265 (>75 %)  55873 (>50 %)  55874 (>50 %)  55879 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 11.8 +/- 12.4
Average RMSD (Å) : 0.467 +/- 0.208

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hXXp
(φψ)-conformation: aaba
Pattern: [FG][AI][KST][ILV][CFV]x[AGI]xx[DKT][EKR][FV]x[LV]x[DTV]x
Conservation:0.6870.5090.2211.684-0.2180.366-1.242-0.949-0.151-0.3641.2450.785-1.0961.663-1.388-0.803-0.949
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1pvg_A_1451pvg   A145161GAKLCNIFSTEFILETAHHHHHHHTEEEEEEEEEaaaaaaaababbbbbbb
1q4r_A_841q4r   A89105FATIFLGSLDKVLVIDYHHHHHHHTEEEEEEEEEaaaaaaaaxabbbbbbb
1s16_A_11151s16   A11151131GISVVNALSKRVEVNVRHHHHHHHTEEEEEEEEEaaaaaaaababbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1pvg_A_1451pvg   A     MGMAGNESIUM ION G - 145
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 145
1pvg_A_1451pvg   A     MSESELENOMETHIONINE A - 146
1pvg_A_1451pvg   A     MGMAGNESIUM ION A - 146
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 146
1pvg_A_1451pvg   A     MSESELENOMETHIONINE K - 147
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 147
1pvg_A_1451pvg   A     MSESELENOMETHIONINE L - 148
1pvg_A_1451pvg   A     MSESELENOMETHIONINE N - 150
1pvg_A_1451pvg   A     MSESELENOMETHIONINE I - 151
1pvg_A_1451pvg   A     MSESELENOMETHIONINE F - 152
1pvg_A_1451pvg   A     MSESELENOMETHIONINE S - 153
1s16_A_11151s16   A     MGMAGNESIUM ION G - 1115
1s16_A_11151s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 1115
1s16_A_11151s16   A     MGMAGNESIUM ION I - 1116
1s16_A_11151s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER I - 1116
1s16_A_11151s16   A     MGMAGNESIUM ION S - 1117
1s16_A_11151s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 1117

Clusters included in this Subclass
CLUSTER: HE.2.91