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Information on SUBCLASS 0.1.6
Subclass Accession number: 6
Subclass: 0.1.6 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 8.9 +/- 14.0
Average RMSD (Å) : 0.511 +/- 0.191

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: pXXX
(φψ)-conformation: aabb
Pattern: [afilmpvwy][aegknrst][dehknrw]x[cfgitv][acfiklmtv]
Conservation:-1.4760.5291.4320.362-0.418-0.430
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoh_A_651aoh   A6570PTKSFDHHHHEEaaaabb
1chm_A_3961chm   A396401PEKNIIHHHHEEaaaaxx
1edq_A_501edq   A5055YNNLVKHHHHEEaaaabb
1g62_A_1041g62   A104109LGNVICHHHHEEaaaabb
1gpe_A_4841gpe   A484489MKEYFAHHHHEEaaaaxa
1iat_A_2381iat   A238243VAKHFVHHHHEEaaaabb
1ih7_A_7881ih7   A788793IAKYDVHHHHEEaaaaxb
1jj7_A_5741jj7   A577582LHRQVAHHHHEEaaaabb
1mf7_A_2921mf7   A292297PRDHVFHHHHEEaaaabb
1mjn_A_2821mjn   A282287ASEFVKHHHHEEaaaabb
1nnf_A_1551nnf   A165170LKENGKHHHHEEaaaaxb
1o4y_A_1611o4y   A162167WFAQRMHHHTEEaaaabb
1q16_B_4521q16   B452457YEDRFVHHHHEEaaaabb
1qdm_A_2791qdm   A279284PEEYILHHHHEEaaaabb
1ug9_A_4771ug9   A478483EKWMFTHHHHEEaaaaxx
1uwc_A_2451uwc   A245250DAHTTYHHHHEEaaaabb
1vk4_A_1411vk4   A141146QGFVRVHHHHEEaaaaxb
3gcb_*_4083gcb   -411416FEEYCFHHHHEEaaaaba
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gpe_A_4841gpe   A     MANALPHA-D-MANNOSE F - 488
1gpe_A_4841gpe   A     MANALPHA-D-MANNOSE A - 489
1gpe_A_4841gpe   A     NAGN-ACETYL-D-GLUCOSAMINE G - 490
1gpe_A_4841gpe   A     MANALPHA-D-MANNOSE G - 490
1gpe_A_4841gpe   A     NAGN-ACETYL-D-GLUCOSAMINE E - 491
1gpe_A_4841gpe   A     MANALPHA-D-MANNOSE E - 491
1gpe_A_4841gpe   A     NAGN-ACETYL-D-GLUCOSAMINE T - 492
1gpe_A_4841gpe   A     MANALPHA-D-MANNOSE T - 492
1gpe_A_4841gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 493
1uwc_A_2451uwc   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID H - 247
3gcb_*_4083gcb   *     GOLGLYCEROL V - 419
3gcb_*_4083gcb   *     GOLGLYCEROL V - 420
3gcb_*_4083gcb   *     GOLGLYCEROL D - 421

Clusters included in this Subclass
CLUSTER: HE.0.4