Information on SUBCLASS 0.1.6 |
Subclass Accession number: 6
Subclass: 0.1.6 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 18 Average sequence ID (%) : 8.9 +/- 14.0 Average RMSD (Å) : 0.511 +/- 0.191 Consensus geometry
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Consensus Sequence: | pXXX |
(φψ)-conformation: | aabb |
Pattern: | [afilmpvwy] | [aegknrst] | [dehknrw] | x | [cfgitv] | [acfiklmtv] |
Conservation: | -1.476 | 0.529 | 1.432 | 0.362 | -0.418 | -0.430 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aoh_A_65 | 1aoh | A | 65 | 70 | PTKSFD | HHHHEE | aaaabb |
1chm_A_396 | 1chm | A | 396 | 401 | PEKNII | HHHHEE | aaaaxx |
1edq_A_50 | 1edq | A | 50 | 55 | YNNLVK | HHHHEE | aaaabb |
1g62_A_104 | 1g62 | A | 104 | 109 | LGNVIC | HHHHEE | aaaabb |
1gpe_A_484 | 1gpe | A | 484 | 489 | MKEYFA | HHHHEE | aaaaxa |
1iat_A_238 | 1iat | A | 238 | 243 | VAKHFV | HHHHEE | aaaabb |
1ih7_A_788 | 1ih7 | A | 788 | 793 | IAKYDV | HHHHEE | aaaaxb |
1jj7_A_574 | 1jj7 | A | 577 | 582 | LHRQVA | HHHHEE | aaaabb |
1mf7_A_292 | 1mf7 | A | 292 | 297 | PRDHVF | HHHHEE | aaaabb |
1mjn_A_282 | 1mjn | A | 282 | 287 | ASEFVK | HHHHEE | aaaabb |
1nnf_A_155 | 1nnf | A | 165 | 170 | LKENGK | HHHHEE | aaaaxb |
1o4y_A_161 | 1o4y | A | 162 | 167 | WFAQRM | HHHTEE | aaaabb |
1q16_B_452 | 1q16 | B | 452 | 457 | YEDRFV | HHHHEE | aaaabb |
1qdm_A_279 | 1qdm | A | 279 | 284 | PEEYIL | HHHHEE | aaaabb |
1ug9_A_477 | 1ug9 | A | 478 | 483 | EKWMFT | HHHHEE | aaaaxx |
1uwc_A_245 | 1uwc | A | 245 | 250 | DAHTTY | HHHHEE | aaaabb |
1vk4_A_141 | 1vk4 | A | 141 | 146 | QGFVRV | HHHHEE | aaaaxb |
3gcb_*_408 | 3gcb | - | 411 | 416 | FEEYCF | HHHHEE | aaaaba |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | F - 488 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | A - 489 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 490 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | G - 490 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 491 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | E - 491 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 492 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | T - 492 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 493 |
1uwc_A_245 | 1uwc | A | FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID | H - 247 |
3gcb_*_408 | 3gcb | * | GOLGLYCEROL | V - 419 |
3gcb_*_408 | 3gcb | * | GOLGLYCEROL | V - 420 |
3gcb_*_408 | 3gcb | * | GOLGLYCEROL | D - 421 |
Clusters included in this Subclass |
CLUSTER: HE.0.4 |