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Information on SUBCLASS 0.1.8
Subclass Accession number: 8
Subclass: 0.1.8 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 9.0 +/- 11.7
Average RMSD (Å) : 0.671 +/- 0.144

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXhX
(φψ)-conformation: aabb
Pattern: x[adekqrs][ekqty]xx[dknpqrst]x[ailvy]xxx
Conservation:-0.7581.0211.5450.178-0.678-0.357-0.1701.385-0.877-1.289-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amf_*_1391amf   -139149WDTLSPKLAPAHHHHGGGEEEEaaaaaaaxbxb
1b35_A_901b35   A91101FDYYYYLYAFWHHHHGGGEEEEaaaaaaababb
1c7q_A_1631c7q   A163173KEEARKRIYVTHHHHTTSEEEEaaaaaaabbbb
1cpt_*_3801cpt   -391401FEELLPKLKSVHHHHGGGEEEEaaaaaaababb
1cyo_*_651cyo   -6878RELSKTFIIGEHHHHTTTEEEEaaaaaaaxaeb
1dm9_A_781dm9   A7887ASEAALLYEE.HHHHGGGEEE.aaaaaaabbx.
1dp4_A_2671dp4   A270280ARQAFQAAKIIHHHHGGGEEEEaaaaaaabbbb
1jdp_A_2641jdp   A267277AKQAYSSLQTVHHHHGGGEEEEaaaaaaabbbx
1jmt_A_1201jmt   A126135AVIDLNNRWF.HHHHHTT-EE.aaaaaaabbb.
1pot_*_1891pot   -199209LKKLMPNVAAFHHHTGGGEEEEaaaaaaaxabb
1q0s_A_1341q0s   A143153FKQNCDKIIFSHHHH-TTEEEEaaaaaaabbbb
1scz_A_1821scz   A191201LLEAKNSTAMLHHHHHTTS-EEaaaaaaabbxb
1t1d_A_951t1d   A95103PQKRNRYYD..HHHHGGGEE..aaaaaaaxb..
1vdk_A_1601vdk   A174184KAQAFDQIVKVHHHHTTT-EEEaaaaaaaxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cpt_*_3801cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 380
1cpt_*_3801cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 382
1cpt_*_3801cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 383
1cpt_*_3801cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE E - 386
1cpt_*_3801cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 387
1cyo_*_651cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE D - 66
1cyo_*_651cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 67
1cyo_*_651cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 68
1cyo_*_651cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1cyo_*_651cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 71
1cyo_*_651cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 74
1jmt_A_1201jmt   A     HEZHEXANE-1,6-DIOL D - 129
1jmt_A_1201jmt   A     HEZHEXANE-1,6-DIOL N - 132
1jmt_A_1201jmt   A     HEZHEXANE-1,6-DIOL R - 133

Clusters included in this Subclass
CLUSTER: HE.2.32
CLUSTER: HE.3.23
CLUSTER: HE.4.23