Information on SUBCLASS 0.1.8 |
Subclass Accession number: 8
Subclass: 0.1.8 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 9.0 +/- 11.7 Average RMSD (Å) : 0.671 +/- 0.144 Consensus geometry
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Consensus Sequence: | XXhX |
(φψ)-conformation: | aabb |
Pattern: | x | [adekqrs] | [ekqty] | x | x | [dknpqrst] | x | [ailvy] | x | x | x |
Conservation: | -0.758 | 1.021 | 1.545 | 0.178 | -0.678 | -0.357 | -0.170 | 1.385 | -0.877 | -1.289 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1amf_*_139 | 1amf | - | 139 | 149 | WDTLSPKLAPA | HHHHGGGEEEE | aaaaaaaxbxb |
1b35_A_90 | 1b35 | A | 91 | 101 | FDYYYYLYAFW | HHHHGGGEEEE | aaaaaaababb |
1c7q_A_163 | 1c7q | A | 163 | 173 | KEEARKRIYVT | HHHHTTSEEEE | aaaaaaabbbb |
1cpt_*_380 | 1cpt | - | 391 | 401 | FEELLPKLKSV | HHHHGGGEEEE | aaaaaaababb |
1cyo_*_65 | 1cyo | - | 68 | 78 | RELSKTFIIGE | HHHHTTTEEEE | aaaaaaaxaeb |
1dm9_A_78 | 1dm9 | A | 78 | 87 | ASEAALLYEE. | HHHHGGGEEE. | aaaaaaabbx. |
1dp4_A_267 | 1dp4 | A | 270 | 280 | ARQAFQAAKII | HHHHGGGEEEE | aaaaaaabbbb |
1jdp_A_264 | 1jdp | A | 267 | 277 | AKQAYSSLQTV | HHHHGGGEEEE | aaaaaaabbbx |
1jmt_A_120 | 1jmt | A | 126 | 135 | AVIDLNNRWF. | HHHHHTT-EE. | aaaaaaabbb. |
1pot_*_189 | 1pot | - | 199 | 209 | LKKLMPNVAAF | HHHTGGGEEEE | aaaaaaaxabb |
1q0s_A_134 | 1q0s | A | 143 | 153 | FKQNCDKIIFS | HHHH-TTEEEE | aaaaaaabbbb |
1scz_A_182 | 1scz | A | 191 | 201 | LLEAKNSTAML | HHHHHTTS-EE | aaaaaaabbxb |
1t1d_A_95 | 1t1d | A | 95 | 103 | PQKRNRYYD.. | HHHHGGGEE.. | aaaaaaaxb.. |
1vdk_A_160 | 1vdk | A | 174 | 184 | KAQAFDQIVKV | HHHHTTT-EEE | aaaaaaaxxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cpt_*_380 | 1cpt | * | HEMPROTOPORPHYRIN IX CONTAINING FE | Q - 380 |
1cpt_*_380 | 1cpt | * | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 382 |
1cpt_*_380 | 1cpt | * | HEMPROTOPORPHYRIN IX CONTAINING FE | A - 383 |
1cpt_*_380 | 1cpt | * | HEMPROTOPORPHYRIN IX CONTAINING FE | E - 386 |
1cpt_*_380 | 1cpt | * | HEMPROTOPORPHYRIN IX CONTAINING FE | M - 387 |
1cyo_*_65 | 1cyo | * | HEMPROTOPORPHYRIN IX CONTAINING FE | D - 66 |
1cyo_*_65 | 1cyo | * | HEMPROTOPORPHYRIN IX CONTAINING FE | A - 67 |
1cyo_*_65 | 1cyo | * | HEMPROTOPORPHYRIN IX CONTAINING FE | R - 68 |
1cyo_*_65 | 1cyo | * | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 70 |
1cyo_*_65 | 1cyo | * | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 71 |
1cyo_*_65 | 1cyo | * | HEMPROTOPORPHYRIN IX CONTAINING FE | F - 74 |
1jmt_A_120 | 1jmt | A | HEZHEXANE-1,6-DIOL | D - 129 |
1jmt_A_120 | 1jmt | A | HEZHEXANE-1,6-DIOL | N - 132 |
1jmt_A_120 | 1jmt | A | HEZHEXANE-1,6-DIOL | R - 133 |
Clusters included in this Subclass |
CLUSTER: HE.2.32 |
CLUSTER: HE.3.23 |
CLUSTER: HE.4.23 |