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Information on SUBCLASS 1.2.4
Subclass Accession number: 8140
Subclass: 1.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 48

Average sequence ID (%) : 12.0 +/- 15.3
Average RMSD (Å) : 0.533 +/- 0.159

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: pXXXX
(φψ)-conformation: aalbb
Pattern: xx[adeknqrst]x[degknqrs][afgikltv]xx
Conservation:-0.493-0.2760.101-0.4712.168-0.184-0.845-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1alq_*_331alq   -3744EKKYNAHIHHHHT-EEaaaalbbb
1brw_A_1361brw   A143150VNENGIAIHHHHSEEEaaaavbbb
1bsg_*_281bsg   -3744ERASGARLHHHHTSEEaaaavbxb
1bu6_O_4161bu6   O423430SDILGTRVHHHHTSEEaaaavbxb
1bue_A_301bue   A3744ETDFNGRIHHHHTSEEaaaavbbb
1bw0_A_3611bw0   A369375LEEENVQ.HHHH-EE.aaaalbb.
1e5m_A_3491e5m   A360366AIAEDKV.HHHHTEE.aaaalbb.
1ejd_A_971ejd   A101108VARFGQGQHHHHSEEEaaaavbbb
1fvr_A_10071fvr   A10091015SLNYSVY.HHHH-EE.aaaalbb.
1g8t_A_791g8t   A8087NAALKVDRHHHH-EEEaaaalbbx
1gpj_A_2011gpj   A208215ARDLGGEAHHHHT-EEaaaavbbx
1gyn_A_801gyn   A97104AEHYGVPVHHHHT-EEaaaavbwb
1h0c_A_3321h0c   A340346IDHFDIE.HHHH-EE.aaaavbx.
1h7b_A_4161h7b   A431438TERTGFAFHHHH--EEaaaavxxx
1hzo_A_281hzo   A3744EKYSQGRLHHHHTSEEaaaavbbb
1i2s_A_321i2s   A3744EEQFDAKLHHHHT-EEaaaalbbb
1iw7_C_8831iw7   C894901GYFLGQRYHHHHTEEEaaaalbbb
1iys_A_291iys   A3744EKSSGGRLHHHHTSEEaaaavbbb
1j11_A_3131j11   A320327FKSAKLDVHHHHT-EEaaaavbxb
1j36_A_4651j36   A474480DEYSGIE.HHHH-EE.aaaavbb.
1jln_A_4851jln   A500506LKEEGVV.HHHHSEE.aaaavbb.
1jq5_A_961jq5   A106113ADELDAYIHHHHT-EEaaaalxxb
1k8t_A_3091k8t   A319326ARELNTYIHHHHTEEEaaaalbxb
1kas_*_3451kas   -356362ALRDQAV.HHHHTEE.aaaalbb.
1kl7_A_3071kl7   A311318FLKSGLYEHHHHSEEEaaaavbxb
1kor_A_111kor   A2128KETYRAEVHHHHT-EEaaaalbxb
1l3s_A_7441l3s   A757764AKQKGYVTHHHHSEEEaaaavbbb
1lo7_A_471lo7   A5158VVERGIVGHHHH-EEEaaaavxae
1luc_A_1241luc   A138145GFNEGYIAHHHHSEEEaaaavbbb
1luc_B_1241luc   B138144AFTTGYC.HHHHSEE.aaaavbb.
1me8_A_3311me8   A346352FEETGIY.HHHHSEE.aaaavbb.
1mfo_A_281mfo   A3744ERRDNVLIHHHHTEEEaaaalbbb
1nns_A_2861nns   A286293DAKYGFVAHHHHTEEEaaaavxbx
1o17_A_1331o17   A140147VNKTNFVFHHHHSEEEaaaavbbb
1obd_A_1271obd   A133139YVKTGTV.HHHHSEE.aaaavbb.
1olt_A_3651olt   A377384LICNFRLDHHHHSEEEaaaalbbx
1pfk_A_1391pfk   A157164SSSHQRISHHHHT-EEaaaalbbb
1prx_A_1571prx   A170176TAEKRVA.HHHH-EE.aaaalbb.
1qo2_A_1771qo2   A184191AIEAEVKVHHHHT-EEaaaalbxb
1qw9_A_1091qw9   A116123AKMVGAEVHHHHT-EEaaaavbxb
1r31_A_1871r31   A202209EAITGGQVHHHH-SEEaaaavbbx
1wsa_A_2901wsa   A290297DKKLGFVAHHHHTEEEaaaavbbb
1yfo_A_4381yfo   A453459MHSERKV.HHHSSEE.aaaalbb.
2aaa_*_2162aaa   -220227NKASGVYCHHHHTSEEaaaavbpb
2kfn_A_7962kfn   A809816AKEQGYVEHHHHSEEEaaaavbbb
2sfa_*_1792sfa   -183190LSAYGVSIHHHHTEEEaaaavbbx
2sga_*_2312sga   -235242LSAYGATVHHHHTEEEaaaavbbx
2tpt_*_1392tpt   -146153IKDVGVAIHHHTSEEEaaaavbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ejd_A_971ejd   A     HAICYCLOHEXYLAMMONIUM ION Q - 106
1ejd_A_971ejd   A     HAICYCLOHEXYLAMMONIUM ION G - 107
1ejd_A_971ejd   A     HAICYCLOHEXYLAMMONIUM ION Q - 108
1g8t_A_791g8t   A     SULSULFATE ANION D - 86
1g8t_A_791g8t   A     SULSULFATE ANION R - 87
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED R - 87
1g8t_A_791g8t   A     SULSULFATE ANION G - 88
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 88
1g8t_A_791g8t   A     SULSULFATE ANION H - 89
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED H - 89
1gyn_A_801gyn   A     CDCADMIUM ION I - 87
1gyn_A_801gyn   A     CDCADMIUM ION H - 91
1h0c_A_3321h0c   A     GOLGLYCEROL W - 332
1h0c_A_3321h0c   A     GOLGLYCEROL R - 333
1h0c_A_3321h0c   A     GOLGLYCEROL V - 336
1h0c_A_3321h0c   A     GOLGLYCEROL S - 337
1h0c_A_3321h0c   A     GOLGLYCEROL I - 340
1h0c_A_3321h0c   A     GOLGLYCEROL F - 343
1h0c_A_3321h0c   A     GOLGLYCEROL D - 344
1h0c_A_3321h0c   A     GOLGLYCEROL I - 345
1iw7_C_8831iw7   C     MGMAGNESIUM ION L - 886
1iw7_C_8831iw7   C     MGMAGNESIUM ION H - 889
1iw7_C_8831iw7   C     MGMAGNESIUM ION L - 890
1iw7_C_8831iw7   C     MGMAGNESIUM ION Y - 895
1iw7_C_8831iw7   C     MGMAGNESIUM ION F - 896
1iw7_C_8831iw7   C     MGMAGNESIUM ION L - 897
1iw7_C_8831iw7   C     MGMAGNESIUM ION G - 898
1iw7_C_8831iw7   C     MGMAGNESIUM ION Q - 899
1iw7_C_8831iw7   C     MGMAGNESIUM ION R - 900
1iw7_C_8831iw7   C     MGMAGNESIUM ION Y - 901
1jq5_A_961jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 96
1jq5_A_961jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 97
1jq5_A_961jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 98
1jq5_A_961jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 100
1jq5_A_961jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 103
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 11
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 12
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 13
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 14
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER I - 16
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER F - 31
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 32
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 33
1kor_A_111kor   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 34
1l3s_A_7441l3s   A     SUCSUCROSE M - 750
1l3s_A_7441l3s   A     SUCSUCROSE E - 751
1l3s_A_7441l3s   A     SUCSUCROSE V - 754
1l3s_A_7441l3s   A     SUCSUCROSE Q - 755
1l3s_A_7441l3s   A     SUCSUCROSE K - 758
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A W - 47
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A V - 57
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A G - 58
1luc_A_1241luc   A     EDO1,2-ETHANEDIOL S - 124
1luc_A_1241luc   A     EDO1,2-ETHANEDIOL R - 125
1luc_A_1241luc   A     EDO1,2-ETHANEDIOL A - 126
1luc_A_1241luc   A     EDO1,2-ETHANEDIOL L - 127
1luc_A_1241luc   A     EDO1,2-ETHANEDIOL M - 128
1luc_A_1241luc   A     EDO1,2-ETHANEDIOL D - 129
1pfk_A_1391pfk   A     ADPADENOSINE-5'-DIPHOSPHATE R - 154
1pfk_A_1391pfk   A     MGMAGNESIUM ION R - 154
1pfk_A_1391pfk   A     ADPADENOSINE-5'-DIPHOSPHATE S - 158
1r31_A_1871r31   A     MEV(R)-MEVALONATE I - 213
1r31_A_1871r31   A     MEV(R)-MEVALONATE L - 214
2kfn_A_7962kfn   A     MGMAGNESIUM ION V - 798
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0c_A_3321h0c   A AC3GOL BINDING SITE FOR CHAIN AR - 333
1h0c_A_3321h0c   A AC3GOL BINDING SITE FOR CHAIN AS - 337
1h0c_A_3321h0c   A AC4GOL BINDING SITE FOR CHAIN AF - 343
1obd_A_1271obd   A AC3SO4 BINDING SITE FOR CHAIN AG - 127
1obd_A_1271obd   A AC3SO4 BINDING SITE FOR CHAIN AS - 128

Clusters included in this Subclass
CLUSTER: HE.0.2
CLUSTER: HE.1.3
CLUSTER: HE.2.21