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Information on SUBCLASS 1.2.4
Subclass Accession number: 82
Subclass: 1.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 5.5 +/- 7.1
Average RMSD (Å) : 0.680 +/- 0.130

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXph
(φψ)-conformation: aapbb
Pattern: x[lty]x[ehmr][nty][DKPR][DHQY]x[DENP][FIMV]x
Conservation:-1.024-0.435-0.641-0.751-0.1160.5921.195-0.8601.3101.644-0.915
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cse_I_181cse   I2535FTLHYPQYNVYHHHH-TTSEEEaaaaaaaxxbb
1dbq_A_1281dbq   A133143MLEEYRHIPMVHHHHTTTS-EEaaaaaaaxwbb
1dih_*_1311dih   -144154AKVMGDYTDIEHHHHTTTSEEEaaaaaaaxxxb
1k8u_A_591k8u   A5969DLDRNKDQEVNHHHHTTT-EEEaaaaaaaxxbx
1mu5_A_1801mu5   A194204TYIITPYAEFIHHHH-TT-EEEaaaaaaabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k8u_A_591k8u   A     MSESELENOMETHIONINE D - 59
1k8u_A_591k8u   A     MSESELENOMETHIONINE L - 60
1k8u_A_591k8u   A     MSESELENOMETHIONINE D - 61
1k8u_A_591k8u   A     MSESELENOMETHIONINE R - 62

Clusters included in this Subclass
CLUSTER: HE.3.141
CLUSTER: HE.5.102