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Information on SUBCLASS 2.1.12
Subclass Accession number: 5332
Subclass: 2.1.12 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 14.3 +/- 15.7
Average RMSD (Å) : 0.671 +/- 0.206

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXchXX
(φψ)-conformation: aalpbb
Pattern: xxxx[ALM][kpqrs][AKNQR][almtv][EGN][ACIMV][efhk][AIPT]x
Conservation:-0.889-1.028-0.755-0.9930.875-0.5890.965-0.1622.4780.491-0.344-0.1380.092
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ejd_A_4021ejd   A402414IEDKLRALGANIEHHHHHHTTT-EEEaaaaaaaagxbbb
1j3b_A_1931j3b   A203215MNYLMPKRGVFPMHHHHGGGGT-EEEaaaaaaaavbxwb
1lsh_B_14731lsh   B14741486APVIASKLEMEIMHHHHHHTTT-EEEaaaaaaaalbxbx
1nvt_A_2371nvt   A238250LLKEAKKVNAKTIHHHHHHTTT-EEEaaaaaaaalxxxb
1uae_*_3341uae   -334346HVPELSRMGAHAEHHHHHHTTT--EEaaaaaaaavpbbb
1vi2_A_2401vi2   A241253LLQQAQQAGCKTIHHHHHHTTT-EEEaaaaaaaNvxxbb
2fok_A_3412fok   A347359DIKGLINTGIFIEHHHHHHTTT--EEaaaaaaaagxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ejd_A_4021ejd   A     PO4PHOSPHATE ION E - 403
1ejd_A_4021ejd   A     PO4PHOSPHATE ION D - 404
1ejd_A_4021ejd   A     PO4PHOSPHATE ION R - 407
1ejd_A_4021ejd   A     PO4PHOSPHATE ION I - 413
1ejd_A_4021ejd   A     PO4PHOSPHATE ION E - 414
1ejd_A_4021ejd   A     PO4PHOSPHATE ION R - 415
1ejd_A_4021ejd   A     PO4PHOSPHATE ION K - 417
1j3b_A_1931j3b   A     PO4PHOSPHATE ION G - 211
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE A - 1474
1lsh_B_14731lsh   B     UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID A - 1474
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE I - 1477
1lsh_B_14731lsh   B     UPLUNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID I - 1477
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE A - 1478
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE L - 1481
1lsh_B_14731lsh   B     PLDDIUNDECYL PHOSPHATIDYL CHOLINE M - 1483
1vi2_A_2401vi2   A     MSESELENOMETHIONINE K - 240
1vi2_A_2401vi2   A     MSESELENOMETHIONINE L - 242
1vi2_A_2401vi2   A     MSESELENOMETHIONINE Q - 243
1vi2_A_2401vi2   A     MSESELENOMETHIONINE Q - 246
1vi2_A_2401vi2   A     MSESELENOMETHIONINE I - 253

Clusters included in this Subclass
CLUSTER: HE.5.84