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Information on SUBCLASS 2.1.3
Subclass Accession number: 109
Subclass: 2.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 9.7 +/- 15.2
Average RMSD (Å) : 0.712 +/- 0.173

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXXXXh
(φψ)-conformation: aalpbb
Pattern: x[adegqrs]xx[adgkrt][afikltv]xx
Conservation:-0.1801.315-0.292-0.9111.569-0.2780.109-1.331
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_1071a9x   A108115LEEFGVTMHHHHT-EEaaaavxxx
1cjx_A_271cjx   A3037FEIMGFTKHHHTT-EEaaaavxbx
1ei7_A_1411ei7   A145152ESSSGLVWHHHH--EEaaaavxxx
1h8p_A_1001h8p   A100107YDKDRAWKHHHH--EEaaaalxbb
1hc7_A_4301hc7   A437444QEETTATTHHHH--EEaaaavxbx
1idp_A_511idp   A5158RSFLDKLWHHHHS-EEaaaalbbb
1j3b_A_4031j3b   A414421IRKHAPRVHHHH--EEaaaalxxb
1j5u_A_261j5u   A3845LEEEGIVLHHHHT-EEaaaalxbx
1l6j_A_2621l6j   A262269YDTDDRFGHHHH--EEaaaaUbbb
1l6j_A_3201l6j   A320327YDRDKLFGHHHH--EEaaaalbbb
1l6j_A_3791l6j   A379386FDSDKKWGHHHH--EEaaaalxbb
1n62_C_1251n62   C129136MQCLGAAYHHHHT-EEaaaavxbx
1o75_A_1671o75   A171178KEKFHFVEHHHH--EEaaaalxbp
1pfk_A_401pfk   A4350GLYEDRMVHHHTT-EEaaaalbbb
1qus_A_2921qus   A295302LAAAGLTPHHHTT-EEaaaagbbx
1sqh_A_761sqh   A7683FRTWGTYVHHHH--EEaaaavxbb
1vh5_A_201vh5   A2128VGFLDIRFHHHTT-EEaaaavxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h8p_A_1001h8p   A     POCPHOSPHOCHOLINE Y - 100
1h8p_A_1001h8p   A     POCPHOSPHOCHOLINE W - 106
1h8p_A_1001h8p   A     POCPHOSPHOCHOLINE Y - 108
1hc7_A_4301hc7   A     ZNZINC ION C - 432
1hc7_A_4301hc7   A     ZNZINC ION E - 433
1hc7_A_4301hc7   A     ZNZINC ION I - 436
1j3b_A_4031j3b   A     PO4PHOSPHATE ION E - 412
1j3b_A_4031j3b   A     PO4PHOSPHATE ION K - 413
1j3b_A_4031j3b   A     PO4PHOSPHATE ION K - 416
1j3b_A_4031j3b   A     PO4PHOSPHATE ION H - 417
1j5u_A_261j5u   A     MSESELENOMETHIONINE E - 51
1j5u_A_261j5u   A     CACALCIUM ION E - 51
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE M - 125
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE P - 126
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE L - 138
1pfk_A_401pfk   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 41
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h8p_A_1001h8p   A AC3POC BINDING SITE FOR RESIDUE A1110Y - 100
1h8p_A_1001h8p   A AC3POC BINDING SITE FOR RESIDUE A1110W - 106
1h8p_A_1001h8p   A AC3POC BINDING SITE FOR RESIDUE A1110Y - 108
1hc7_A_4301hc7   A ZN1ZN BINDING SITE FOR CHAIN AC - 432

Clusters included in this Subclass
CLUSTER: HE.2.16