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Information on SUBCLASS 2.2.2
Subclass Accession number: 122
Subclass: 2.2.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 50

Average sequence ID (%) : 17.0 +/- 16.2
Average RMSD (Å) : 0.592 +/- 0.215

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXGhph
(φψ)-conformation: aagpbb
Pattern: xxx[acfgilmvwy][adegkqrst][adegknqrst]x[DEG][acfgilmvy][adegknqrst][acfgilpvy]x
Conservation:-0.543-0.368-0.580-0.194-0.053-0.152-0.4773.117-0.268-0.081-0.017-0.385
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b33_N_331b33   N4051QQRIQKMGGKIVHHHHHHTT-EEEaaaaaaavxbxa
1b74_A_1221b74   A124135QRKLEEGGADVFHHHHHTTS-EEEaaaaaaavbxxb
1b8o_A_2221b8o   A225236VIVARHCGLRVFHHHHHHTT-EEEaaaaaaavxxbb
1bup_A_1521bup   A159170KDAGTIAGLNVLHHHHHHTT-EEEaaaaaaavxbxa
1byf_A_141byf   A1828GTYCQSRGMAL.HHHHHTTT-EE.aaaaaaavbbp.
1cc8_A_531cc8   A5768LEKIKKTGKEVRHHHHHTTSS-EEaaaaaaavxxxa
1ecs_A_141ecs   A1829AAFYERLGFGIVHHHHHTTT-EEEaaaaaaavxbxa
1ejd_A_2321ejd   A239250LVAAAISGGKIVHHHHHTTT-EEEaaaaaaavxbbb
1f1u_A_1631f1u   A167178RAYLEDLGFRVSHHHHHHTT-EEEaaaaaaagxbxa
1f9z_A_131f9z   A1829DFYTKVLGMKLLHHHHHTT--EEEaaaaaaavxbxa
1f9z_A_821f9z   A8697CEKIRQNGGNVTHHHHHHTT-EEEaaaaaaagpbba
1fs0_G_911fs0   G103114MKTWTDKGVQCDHHHHHHTT-EEEaaaaaaavxxbb
1g2o_A_2101g2o   A213224TIAARAAGAEVLHHHHHHTT-EEEaaaaaaavbxbb
1g2q_A_1361g2q   A142153GELVEQLEANLLHHHHHHTT-EEEaaaaaaavbbxa
1g3q_A_1451g3q   A155166GIVLKKAGLAILHHHHHHTT-EEEaaaaaaagxxxa
1g41_A_3521g41   A357368KALMATEGVNIAHHHHHTTT-EEEaaaaaaavbbbb
1g60_A_761g60   A8394CQYLVSKGMIFQHHHHHHTT-EEEaaaaaaavxbxa
1hnn_A_2361hnn   A240251REALVRSGYKVRHHHHHHTTEEEEaaaaaaavbxxa
1itw_A_131itw   A2738KAFTGSSGIAVEHHHHHTTT-EEEaaaaaaavbbbb
1jif_A_161jif   A2132SFWVDTLGFEKDHHHHHTT--EEEaaaaaaavxbxa
1jr2_A_181jr2   A2031IRELGLYGLEATHHHHHTTT-EEEaaaaaaavxxbb
1js3_A_2191js3   A226237LERDKAAGLIPFHHHHHHTT-EEEaaaaaaavxbxa
1k47_A_3061k47   A313324KNRWADLGIELLHHHHHHTT-EEEaaaaaaavxxxa
1k87_A_2651k87   A272283ARKLEEKGFRYSHHHHHTTT-EEEaaaaaaagxbbb
1kaf_A_1691kaf   A172183IQKFTDIGMSCKHHHHHTTT-EEEaaaaaaagxxbb
1kll_A_821kll   A89100YAELVDAGYEGHHHHHHHTT-EEEaaaaaaagxxxa
1kpg_A_2121kpg   A212223QECASANGFTVTHHHHHTTT-EEEaaaaaaavbbxa
1l5j_A_4511l5j   A461471PDFIMNRGGVS.HHHHHTTT-EE.aaaaaaavxbb.
1lh0_A_11321lh0   A11371148MEIIQAHGATLAHHHHHHTT-EEEaaaaaaavxbxa
1lhp_A_211lhp   A2536TFPLQVLGFEVDHHHHHHTT-EEEaaaaaaavxxbb
1m1n_A_3641m1n   A364375IGAYEDLGMEVVHHHHHTTT-EEEaaaaaaavxbxa
1m1n_B_3731m1n   B380391VKFLLELGCEPVHHHHHHTT-EEEaaaaaaavxbwa
1m7y_A_3201m7y   A342352VSGLQKSGISC.HHHHHTTT-EE.aaaaaaavbbb.
1mkz_A_281mkz   A3445RDSAQEAGHHVVHHHHHHTT-EEEaaaaaaagxbxa
1nox_*_1251nox   -144155LLLLEAYGLGSVHHHHHHTT-EEEaaaaaaavbxbb
1o98_A_4111o98   A429440VDAILAKGGIAIHHHHHHTT-EEEaaaaaaavxbbb
1qip_A_411qip   A4657DFYTRVLGMTLIHHHHHTT--EEEaaaaaaavxbxa
1qo0_A_1511qo0   A161172RHLYRQHGGTVLHHHHHTTT-EEEaaaaaaavxbxa
1riq_A_3941riq   A398408DEIAREKGLGI.HHHHHTTT-EE.aaaaaaavxbb.
1ro2_A_2211ro2   A229239AEKGKRLGITL.HHHHGGGT-EE.aaaaaaavxbx.
1rtq_A_1561rtq   A162173ANQYKSEGKNVVHHHHHHTT-EEEaaaaaaavxxxa
1s9r_A_511s9r   A6273VAELKANDINVVHHHHHTTT-EEEaaaaaaalbxxb
1scj_B_3231scj   B327338KDVISQKGGKVEHHHHHTTT-EEEaaaaaaagpbxa
1tca_*_521tca   -5364IPLSTQLGYTPCHHHHHTTT-EEEaaaaaaagxbwb
1tgo_A_5071tgo   A526537REIEEKFGFKVLHHHHHTT--EEEaaaaaaavxbxa
1ufk_A_2241ufk   A228239REAMAGAGFRPLHHHHHHTT-EEEaaaaaaavxbwa
1uiu_A_3511uiu   A361372RADMRQIGADVSHHHHHTTT-EEEaaaaaaagbxxx
1v7r_A_101v7r   A1728ANFLGTFGIEIVHHHHHTTT-EEEaaaaaaavbbxb
1xgs_A_1291xgs   A136146ENEIRKRGFKP.HHHHHTTT-EE.aaaaaaavbbx.
6mht_A_236mht   A2536RLALESCGAECVHHHHHTTT-EEEaaaaaaavxbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b33_N_331b33   N     CYCPHYCOCYANOBILIN Y - 33
1b33_N_331b33   N     CYCPHYCOCYANOBILIN E - 34
1b33_N_331b33   N     CYCPHYCOCYANOBILIN W - 36
1b33_N_331b33   N     CYCPHYCOCYANOBILIN F - 37
1b33_N_331b33   N     CYCPHYCOCYANOBILIN Q - 40
1b33_N_331b33   N     CYCPHYCOCYANOBILIN Q - 41
1b33_N_331b33   N     CYCPHYCOCYANOBILIN Q - 44
1b8o_A_2221b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL T - 242
1b8o_A_2221b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL N - 243
1b8o_A_2221b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL K - 244
1cc8_A_531cc8   A     HGMERCURY (II) ION K - 65
1ecs_A_141ecs   A     CACALCIUM ION A - 19
1ecs_A_141ecs   A     CACALCIUM ION E - 22
1ecs_A_141ecs   A     PG4TETRAETHYLENE GLYCOL V - 29
1ecs_A_141ecs   A     PG4TETRAETHYLENE GLYCOL F - 30
1ejd_A_2321ejd   A     PO4PHOSPHATE ION R - 232
1ejd_A_2321ejd   A     PO4PHOSPHATE ION I - 233
1ejd_A_2321ejd   A     HAICYCLOHEXYLAMMONIUM ION K - 248
1ejd_A_2321ejd   A     HAICYCLOHEXYLAMMONIUM ION I - 249
1ejd_A_2321ejd   A     HAICYCLOHEXYLAMMONIUM ION V - 250
1ejd_A_2321ejd   A     HAICYCLOHEXYLAMMONIUM ION C - 251
1ejd_A_2321ejd   A     PO4PHOSPHATE ION R - 252
1ejd_A_2321ejd   A     HAICYCLOHEXYLAMMONIUM ION R - 252
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL T - 230
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL N - 231
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL L - 232
1g3q_A_1451g3q   A     ADPADENOSINE-5'-DIPHOSPHATE N - 171
1g3q_A_1451g3q   A     ADPADENOSINE-5'-DIPHOSPHATE R - 172
1g3q_A_1451g3q   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 173
1jif_A_161jif   A     BLMBLEOMYCIN A2 D - 32
1jif_A_161jif   A     BLMBLEOMYCIN A2 F - 33
1js3_A_2191js3   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 242
1k87_A_2651k87   A     GOLGLYCEROL I - 265
1k87_A_2651k87   A     GOLGLYCEROL A - 266
1k87_A_2651k87   A     GOLGLYCEROL E - 267
1k87_A_2651k87   A     LACLACTIC ACID D - 285
1kll_A_821kll   A     MSESELENOMETHIONINE K - 88
1kll_A_821kll   A     MSESELENOMETHIONINE L - 92
1kpg_A_2121kpg   A     MSESELENOMETHIONINE Q - 212
1kpg_A_2121kpg   A     MSESELENOMETHIONINE E - 213
1kpg_A_2121kpg   A     MSESELENOMETHIONINE C - 214
1kpg_A_2121kpg   A     MSESELENOMETHIONINE A - 215
1kpg_A_2121kpg   A     MSESELENOMETHIONINE F - 220
1lh0_A_11321lh0   A     OROOROTIC ACID L - 1154
1mkz_A_281mkz   A     MSESELENOMETHIONINE L - 33
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE Y - 137
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE L - 140
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE L - 144
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE V - 155
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE P - 156
1nox_*_1251nox   *     FMNFLAVIN MONONUCLEOTIDE M - 157
1qip_A_411qip   A     GNBS-P-NITROBENZYLOXYCARBONYLGLUTATHIONE Q - 58
1qip_A_411qip   A     SEO2-MERCAPTOETHANOL Q - 58
1qip_A_411qip   A     GNBS-P-NITROBENZYLOXYCARBONYLGLUTATHIONE K - 59
1qip_A_411qip   A     SEO2-MERCAPTOETHANOL K - 59
1qip_A_411qip   A     GNBS-P-NITROBENZYLOXYCARBONYLGLUTATHIONE C - 60
1qip_A_411qip   A     SEO2-MERCAPTOETHANOL C - 60
1qip_A_411qip   A     SEO2-MERCAPTOETHANOL D - 61
1qip_A_411qip   A     GNBS-P-NITROBENZYLOXYCARBONYLGLUTATHIONE F - 62
1qip_A_411qip   A     SEO2-MERCAPTOETHANOL F - 62
1qo0_A_1511qo0   A     BMDBUTYRAMIDE Y - 152
1qo0_A_1511qo0   A     BMDBUTYRAMIDE P - 153
1riq_A_3941riq   A     MSESELENOMETHIONINE I - 400
1rtq_A_1561rtq   A     ZNZINC ION Q - 177
1s9r_A_511s9r   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL S - 51
1s9r_A_511s9r   A     UNXUNKNOWN ATOM OR ION D - 53
1s9r_A_511s9r   A     UNXUNKNOWN ATOM OR ION E - 57
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE G - 23
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE F - 24
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE N - 39
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qip_A_411qip   A HD2HYDROPHOBIC SUBSTRATE BINDING POCKET AT DIMER INTERFACE.C - 60
1qip_A_411qip   A HD2HYDROPHOBIC SUBSTRATE BINDING POCKET AT DIMER INTERFACE.F - 62
1qo0_A_1511qo0   A LGABUTYRAMIDE BINDING SITEY - 152

Clusters included in this Subclass
CLUSTER: HE.2.46
CLUSTER: HE.3.45
CLUSTER: HE.3.84
CLUSTER: HE.4.13
CLUSTER: HE.4.152
CLUSTER: HE.5.111
CLUSTER: HE.5.5