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Information on SUBCLASS 2.2.7
Subclass Accession number: 5353
Subclass: 2.2.7 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 14.1 +/- 15.8
Average RMSD (Å) : 0.752 +/- 0.197

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXhpXh
(φψ)-conformation: aapabb
Pattern: x[afilpvwy]xx[afklmv]x[eknpqrs]x[acfitv][DEKQRTY]x[cfiltvy]
Conservation:-0.982-0.462-0.780-0.3380.3760.1390.820-1.3330.6521.939-1.0891.058
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16pk_*_22416pk   -226237LLDNMLQRIDYLHHHHHGGG-SEEaaaaaaaababb
1a8i_*_6501a8i   -652663LAEKVIPAADLSHHHHHGGG-SEEaaaaaaaaxabb
1a99_A_2091a99   A213224LLLKLRPNIRYFHHHHHGGG--EEaaaaaaaaxabb
1bx4_A_2071bx4   A209220SLMKVMPYVDILHHHHHGGG-SEEaaaaaaaaxabb
1df7_A_971df7   A99110VYALALPYATRCHHHHHGGG-SEEaaaaaaaaxabb
1f0k_A_1331f0k   A134145TNKWLAKIATKVHHHHHTTT-SEEaaaaaaaaxabb
1fzq_A_751fzq   A7788YWRSYFENTDILHHHHHHTT-SEEaaaaaaaaxabb
1gc5_A_2861gc5   A291302ALVELLPKFTSVHHHHHGGG-SEEaaaaaaaababb
1iic_A_2691iic   A275286LFKRYQSRFELIHHHHHHTTSSEEaaaaaaaaxabb
1juv_A_1301juv   A132143LLYAALPYADEVHHHHHGGG-SEEaaaaaaaaxabb
1l2l_A_2761l2l   A281292EIVKLLKHFYSVHHHHHGGG-SEEaaaaaaaababb
1m2x_A_2391m2x   A248259NIQQKFSGAQYVHHHHHTTT-SEEaaaaaaaapabb
1mkz_A_871mkz   A8798APEALLPLFDREHHHHHGGG-SEEaaaaaaaaxabx
1ml4_A_901ml4   A93104TIKTVEQYCDVIHHHHHTTT-SEEaaaaaaaababb
1p9b_A_291p9b   A3243IIDMLSEYSDITHHHHHGGG-SEEaaaaaaaababb
1p9l_A_1071p9l   A115126FAKQAARFFDSAHHHHHGGG-SEEaaaaaaaababb
1php_*_1981php   -204215VIDNLLEKVDNLHHHHHTTT-SEEaaaaaaaaxabb
1pq4_A_891pq4   A90101QQLAALSEAEAYHHHHHGGG-SEEaaaaaaaaxabb
1puj_A_121puj   A1627EVTEKLKLIDIVHHHHHGGG-SEEaaaaaaaababb
1pvd_A_1241pvd   A125136FHRMSANISETTHHHHHGGG-SEEaaaaaaaababb
1q15_A_2491q15   A254265VTALASRHFKKLHHHHHTTT-SEEaaaaaaaababb
1qf5_A_161qf5   A1930IVDLLTERAKYVHHHHHGGG-SEEaaaaaaaababb
1ra9_*_971ra9   -99110VYEQFLPKAQKLHHHHHGGG-SEEaaaaaaaaxabb
1ua4_A_2731ua4   A278289EILNVLGMFYSVHHHHHGGG-SEEaaaaaaaaxabb
1ukk_A_1241ukk   A124135PVSRALAGVKEVHHHHHTTT-SEEaaaaaaaaxabb
1v1a_A_1731v1a   A179190FLERALPGVDLLHHHHHGGG-SEEaaaaaaaaxabb
1vpe_*_1981vpe   -204215VITNLMEKADRIHHHHHTTT-SEEaaaaaaaaxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8i_*_6501a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) V - 650
1a8i_*_6501a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 653
1a8i_*_6501a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) I - 657
1a8i_*_6501a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Q - 665
1bx4_A_2071bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED F - 221
1bx4_A_2071bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED G - 222
1bx4_A_2071bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED N - 223
1bx4_A_2071bx4   A     ADNADENOSINE N - 223
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 97
1df7_A_971df7   A     GOLGLYCEROL G - 97
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 98
1df7_A_971df7   A     GOLGLYCEROL Q - 98
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 99
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 100
1df7_A_971df7   A     MTXMETHOTREXATE Y - 100
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 102
1df7_A_971df7   A     MTXMETHOTREXATE E - 111
1df7_A_971df7   A     MTXMETHOTREXATE V - 112
1df7_A_971df7   A     GOLGLYCEROL V - 112
1df7_A_971df7   A     MTXMETHOTREXATE T - 113
1df7_A_971df7   A     GOLGLYCEROL T - 113
1df7_A_971df7   A     GOLGLYCEROL E - 114
1df7_A_971df7   A     GOLGLYCEROL V - 115
1fzq_A_751fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 93
1juv_A_1301juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE P - 130
1juv_A_1301juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 131
1juv_A_1301juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 132
1juv_A_1301juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 133
1m2x_A_2391m2x   A     GOLGLYCEROL V - 239
1ml4_A_901ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID R - 107
1p9b_A_291p9b   A     MGMAGNESIUM ION K - 29
1p9b_A_291p9b   A     IMO6-O-PHOSPHORYL INOSINE MONOPHOSPHATE K - 29
1p9b_A_291p9b   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 29
1p9b_A_291p9b   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 30
1p9b_A_291p9b   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 31
1p9l_A_1071p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID H - 132
1php_*_1981php   *     ADPADENOSINE-5'-DIPHOSPHATE D - 200
1php_*_1981php   *     ADPADENOSINE-5'-DIPHOSPHATE K - 201
1puj_A_121puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 30
1qf5_A_161qf5   A     PO4PHOSPHATE ION K - 16
1qf5_A_161qf5   A     MGMAGNESIUM ION K - 16
1qf5_A_161qf5   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 16
1qf5_A_161qf5   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 17
1qf5_A_161qf5   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 18
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 97
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 98
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 99
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 100
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 102
1ua4_A_2731ua4   A     AMPADENOSINE MONOPHOSPHATE L - 291
1ukk_A_1241ukk   A     CSD3-SULFINOALANINE P - 124
1ukk_A_1241ukk   A     CSD3-SULFINOALANINE V - 125
1ukk_A_1241ukk   A     CSD3-SULFINOALANINE S - 126
1ukk_A_1241ukk   A     CSD3-SULFINOALANINE R - 127
1v1a_A_1731v1a   A     ADPADENOSINE-5'-DIPHOSPHATE S - 193
1vpe_*_1981vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 198
1vpe_*_1981vpe   *     3PG3-PHOSPHOGLYCERIC ACID D - 200
1vpe_*_1981vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 201
1vpe_*_1981vpe   *     MGMAGNESIUM ION K - 201
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qf5_A_161qf5   A GNSTHESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE.G - 17
1qf5_A_161qf5   A GNSTHESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE.K - 18

Clusters included in this Subclass
CLUSTER: HE.4.124
CLUSTER: HE.4.184
CLUSTER: HE.4.57
CLUSTER: HE.5.230
CLUSTER: HE.5.246
CLUSTER: HE.5.29
CLUSTER: HE.6.20
CLUSTER: HE.6.37
CLUSTER: HE.6.58