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Information on SUBCLASS 2.3.1
Subclass Accession number: 5363
Subclass: 2.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 47

Average sequence ID (%) : 11.5 +/- 14.1
Average RMSD (Å) : 0.634 +/- 0.230

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXhpXh
(φψ)-conformation: aababb
Pattern: [afgilmvy]x[adegkqrst]xx[dehknpqs]x[afgilpvy]x[acfgilmvwy]
Conservation:0.921-0.5340.612-0.630-0.0972.192-1.280-0.219-0.737-0.229
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aog_A_3791aog   A382391ASKRYEVVAVHHHH-SEEEEaaaababbbb
1aop_*_3751aop   -382391IAKIHKGDFRHHHH-SSEEEaaaaxabbbb
1ccw_B_1271ccw   B138147VLEAVNLPLQHHHH-SS-EEaaaababxbb
1cjc_A_881cjc   A91100LQDAYHAVVLHHHHSSEEEEaaaababbbx
1dxh_A_901dxh   A97106LGRMYDAIEYHHHH-SEEEEaaaababbbb
1e5k_A_351e5k   A4352LMTQLSHVVVHHHH-S-EEEaaaababbbb
1e6c_A_1261e6c   A143152YQDVAHYVVDHHHHH-SEEEaaaaxabbbx
1e8c_A_3991e8c   A401410AEEFADVAVVHHHH-SEEEEaaaababbbx
1e9l_A_1971e9l   A200209LSQSLDYIQVHHHH-SEEEEaaaaxabbxx
1eg7_A_12851eg7   A12911300ALKLADYVVTHHHH-SEEEEaaaababbbb
1ehy_A_2521ehy   A258267VPKYYSNYTMHHHHBSSEEEaaaababbbb
1f5a_A_3671f5a   A367376FFQKYKHYIVHHHH-SEEEEaaNababbbb
1gg4_A_4101gg4   A420429LIAEQQVITIHHHH-SSEEEaaaababbbb
1guq_A_1241guq   A141150LGKTYPWVQVHHHH-SEEEEaaaababbbx
1gvn_B_1751gvn   B194203KTGLFSDIRLHHT--S-EEEaavaxabbbb
1gz3_A_4011gz3   A407416MASINERPVIHHHH-SS-EEaaaababxxb
1h2b_A_1971h2b   A206215LKVMTPATVIHHHH---EEEaaaabaxxbb
1h72_C_2741h72   C281290LRDYYENTIRHHHH-S-EEEaaaabaxbbb
1hjx_A_1911hjx   A194203ISQHLDFISIHHHH-SEEEEaaaaxabbxx
1hk8_A_5171hk8   A527536AAQHLDYFGVHHHH-SEEEEaaaababbbb
1hkk_A_1971hkk   A200209IAQNLDFVNLHHHH-SEEEEaaaaxabbxx
1hyu_A_3651hyu   A374383LAGIVEHVTLHHHHBSEEEEaaaababbbb
1ihu_A_1321ihu   A132141LLTRFDHIIFHHHH-SEEEEaaaababbbb
1itx_A_2641itx   A267276IAAIVDWINIHHHHSSEEEEaaaaxabbxx
1jbw_A_3481jbw   A355364LTAAFSTVYLHHHH-SEEEEaaaababbbb
1ji0_A_1981ji0   A201210ALKVAHYGYVHHHH-SEEEEaaaaxabbbb
1jih_A_1291jih   A142151FKSACDLVERHHHH-S-EEEaaaababbbx
1k1e_A_1121k1e   A114123AFAACGTSFAHHHHSSEEEEaaaaxabbbb
1kbz_A_1621kbz   A169178LAKERQTLSVHHHH-SEEEEaaaababbbb
1m44_A_951m44   A107116MRGAYQLGALHHHH-SEEEEaaaababxbb
1mjf_A_1991mjf   A209218MKKVFDRVYYHHHH-SEEEEaaaaxabbbb
1nnf_A_2521nnf   A258266LVAARAEYP.HHHHS--EE.aaaabaxxx.
1o6b_A_161o6b   A2534GAHIFEQVYVHHHHSSEEEEaaaaxabbbx
1od6_A_141od6   A2332ASRLFEKVTVHHHHSSEEEEaaaababbbx
1oth_A_1451oth   A151160LAKEASIPIIHHHH-SS-EEaaaaxabpbb
1owl_A_191owl   A2433ARAQSAQLIGHHHH-S-EEEaaaabaxbbx
1oxw_A_661oxw   A6675LADYFDVIGGHHHH-SEEEEaaaababbbb
1pbt_A_271pbt   A2837LLEEKDKIFVHHHH-S-EEEaaaababbbb
1phr_*_811phr   -8190DFVTFDYILCHHHH-SEEEEaaaaxabbbb
1qam_A_431qam   A4857LVQRCNFVTAHHHHSSEEEEaaaababbbx
1r89_A_721r89   A8392GKAVLDSYEIHHHHSSSEEEaaaababbbx
1rif_A_1411rif   A152161YLENYEGKILHHHH-SSEEEaaaabaxbbb
1rjd_A_2091rjd   A219228IMSKFSHGLWHHHH-SSEEEaaaababbbb
1rjd_A_721rjd   A92101FLVANEKVQVHHHH-SSEEEaaaabaxbbb
1s4n_A_1661s4n   A172181VTKAVSSEVKHHHH-SS-EEaaaaxabxbb
1v8f_A_301v8f   A3948ARRENPFVVVHHHH-SEEEEaaaababbbb
2dap_*_1232dap   -131140AAAVLAEHQQHHHH-SSEEEaaaaxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ccw_B_1271ccw   B     TARD(-)-TARTARIC ACID R - 149
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL I - 128
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL A - 129
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL E - 130
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL M - 132
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL E - 133
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL V - 135
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL L - 136
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL R - 139
1e6c_A_1261e6c   A     MPD2-METHYL-2,4-PENTANEDIOL Y - 143
1e8c_A_3991e8c   A     MSESELENOMETHIONINE A - 399
1e8c_A_3991e8c   A     MSESELENOMETHIONINE I - 400
1e8c_A_3991e8c   A     MSESELENOMETHIONINE A - 401
1e8c_A_3991e8c   A     MSESELENOMETHIONINE E - 402
1e8c_A_3991e8c   A     MSESELENOMETHIONINE A - 408
1e8c_A_3991e8c   A     MSESELENOMETHIONINE V - 409
1e8c_A_3991e8c   A     MSESELENOMETHIONINE V - 410
1f5a_A_3671f5a   A     MSESELENOMETHIONINE F - 368
1f5a_A_3671f5a   A     MSESELENOMETHIONINE Y - 374
1f5a_A_3671f5a   A     MSESELENOMETHIONINE I - 375
1f5a_A_3671f5a   A     MSESELENOMETHIONINE V - 376
1gg4_A_4101gg4   A     MSESELENOMETHIONINE K - 410
1gg4_A_4101gg4   A     MSESELENOMETHIONINE L - 413
1gg4_A_4101gg4   A     MSESELENOMETHIONINE T - 428
1gg4_A_4101gg4   A     MSESELENOMETHIONINE L - 430
1gg4_A_4101gg4   A     MSESELENOMETHIONINE V - 431
1gg4_A_4101gg4   A     MSESELENOMETHIONINE K - 432
1guq_A_1241guq   A     GUDGLUCOSE-URIDINE-C1,5'-DIPHOSPHATE F - 151
1guq_A_1241guq   A     GUDGLUCOSE-URIDINE-C1,5'-DIPHOSPHATE E - 152
1guq_A_1241guq   A     GUDGLUCOSE-URIDINE-C1,5'-DIPHOSPHATE N - 153
1h2b_A_1971h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) G - 197
1h2b_A_1971h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) L - 198
1h2b_A_1971h2b   A     ZNZINC ION L - 198
1h2b_A_1971h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) G - 199
1h2b_A_1971h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) L - 217
1h2b_A_1971h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) D - 218
1h72_C_2741h72   C     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 289
1hjx_A_1911hjx   A     GOLGLYCEROL I - 191
1hjx_A_1911hjx   A     GOLGLYCEROL A - 192
1hjx_A_1911hjx   A     GOLGLYCEROL I - 203
1hjx_A_1911hjx   A     GOLGLYCEROL M - 204
1hkk_A_1971hkk   A     AMIALLOSAMIZOLINE N - 208
1hkk_A_1971hkk   A     NAAN-ACETYL-D-ALLOSAMINE M - 210
1hkk_A_1971hkk   A     AMIALLOSAMIZOLINE M - 210
1itx_A_2641itx   A     GOLGLYCEROL N - 275
1itx_A_2641itx   A     GOLGLYCEROL I - 276
1ji0_A_1981ji0   A     MSESELENOMETHIONINE V - 210
1ji0_A_1981ji0   A     MSESELENOMETHIONINE E - 212
1k1e_A_1121k1e   A     HGMERCURY (II) ION P - 113
1k1e_A_1121k1e   A     HGMERCURY (II) ION A - 114
1k1e_A_1121k1e   A     HGMERCURY (II) ION F - 115
1k1e_A_1121k1e   A     HGMERCURY (II) ION A - 117
1k1e_A_1121k1e   A     HGMERCURY (II) ION C - 118
1nnf_A_2521nnf   A     FEFE (III) ION R - 262
1nnf_A_2521nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID R - 262
1nnf_A_2521nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID E - 264
1o6b_A_161o6b   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 16
1o6b_A_161o6b   A     ADPADENOSINE-5'-DIPHOSPHATE G - 17
1o6b_A_161o6b   A     PO4PHOSPHATE ION H - 18
1o6b_A_161o6b   A     ADPADENOSINE-5'-DIPHOSPHATE H - 18
1o6b_A_161o6b   A     MSESELENOMETHIONINE D - 20
1o6b_A_161o6b   A     ADPADENOSINE-5'-DIPHOSPHATE D - 20
1o6b_A_161o6b   A     MSESELENOMETHIONINE I - 21
1o6b_A_161o6b   A     ADPADENOSINE-5'-DIPHOSPHATE I - 21
1o6b_A_161o6b   A     MSESELENOMETHIONINE I - 22
1o6b_A_161o6b   A     MSESELENOMETHIONINE R - 24
1o6b_A_161o6b   A     ADPADENOSINE-5'-DIPHOSPHATE R - 24
1o6b_A_161o6b   A     MSESELENOMETHIONINE G - 25
1od6_A_141od6   A     PNS4'-PHOSPHOPANTETHEINE H - 16
1od6_A_141od6   A     PNS4'-PHOSPHOPANTETHEINE A - 33
1od6_A_141od6   A     PNS4'-PHOSPHOPANTETHEINE L - 35
1oxw_A_661oxw   A     MSESELENOMETHIONINE D - 71
1pbt_A_271pbt   A     MSESELENOMETHIONINE K - 27
1pbt_A_271pbt   A     MSESELENOMETHIONINE L - 28
1pbt_A_271pbt   A     MSESELENOMETHIONINE L - 29
1pbt_A_271pbt   A     MSESELENOMETHIONINE E - 30
1pbt_A_271pbt   A     MSESELENOMETHIONINE I - 35
1pbt_A_271pbt   A     MSESELENOMETHIONINE V - 37
1r89_A_721r89   A     MNMANGANESE (II) ION R - 93
1rjd_A_721rjd   A     SAMS-ADENOSYLMETHIONINE R - 81
1rjd_A_721rjd   A     SAMS-ADENOSYLMETHIONINE N - 103
1rjd_A_721rjd   A     SAMS-ADENOSYLMETHIONINE L - 104
1v8f_A_301v8f   A     GOLGLYCEROL R - 30
1v8f_A_301v8f   A     GOLGLYCEROL G - 31
1v8f_A_301v8f   A     GOLGLYCEROL H - 32
1v8f_A_301v8f   A     GOLGLYCEROL L - 33
1v8f_A_301v8f   A     GOLGLYCEROL A - 34
1v8f_A_301v8f   A     GOLGLYCEROL L - 35
1v8f_A_301v8f   A     P6GHEXAETHYLENE GLYCOL P - 44
1v8f_A_301v8f   A     P6GHEXAETHYLENE GLYCOL F - 45
2dap_*_1232dap   *     API2,6-DIAMINOPIMELIC ACID W - 144
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h2b_A_1971h2b   A NJ1COFACTOR BINDING SITE FOR CHAIN AG - 197
1hjx_A_1911hjx   A CC5GOL BINDING SITE FOR CHAIN AI - 191
1hjx_A_1911hjx   A BC8GOL BINDING SITE FOR CHAIN AM - 204
1od6_A_141od6   A AC3SO4 BINDING SITE FOR CHAIN AH - 16
1od6_A_141od6   A AC1PNS BINDING SITE FOR CHAIN AL - 35

Clusters included in this Subclass
CLUSTER: HE.2.48
CLUSTER: HE.2.55
CLUSTER: HE.3.19
CLUSTER: HE.4.26