Information on SUBCLASS 2.5.7 |
Subclass Accession number: 5409
Subclass: 2.5.7 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 18.8 +/- 15.9 Average RMSD (Å) : 0.700 +/- 0.200 Consensus geometry
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Consensus Sequence: | pXGXXX |
(φψ)-conformation: | aagpbp |
Pattern: | [LTV] | [AK] | x | [FL] | [E] | [KQR] | x | [G] | [FKL] | [AT] | x | x | [GNV] | [LTV] | x | [GIP] |
Conservation: | -0.218 | 0.175 | -0.613 | 0.690 | 1.883 | 0.438 | -0.613 | 2.474 | -0.744 | 0.465 | -0.678 | -0.481 | -0.810 | -0.218 | -0.613 | -1.138 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fw9_A_35 | 1fw9 | A | 35 | 50 | TKRFEQQGKTVSVTMI | HHHHHTTT--EEEEEE | aaaaaaavbxxbbbxa |
1nm2_A_145 | 1nm2 | A | 149 | 164 | VAHLERLGLTPANVNG | HHHHHHTT-EEEEEEE | aaaaaaagxbxabbae |
1vhs_A_125 | 1vhs | A | 128 | 143 | LKLFEKHGFAEWGLFP | HHHHHHTT-EEEEEEE | aaaaaaavxbxabbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fw9_A_35 | 1fw9 | A | PHBP-HYDROXYBENZOIC ACID | T - 35 |
1fw9_A_35 | 1fw9 | A | PHBP-HYDROXYBENZOIC ACID | F - 38 |
1fw9_A_35 | 1fw9 | A | PHBP-HYDROXYBENZOIC ACID | V - 47 |
1vhs_A_125 | 1vhs | A | MSESELENOMETHIONINE | K - 125 |
1vhs_A_125 | 1vhs | A | MSESELENOMETHIONINE | P - 126 |
1vhs_A_125 | 1vhs | A | MSESELENOMETHIONINE | F - 136 |
1vhs_A_125 | 1vhs | A | MSESELENOMETHIONINE | W - 139 |
1vhs_A_125 | 1vhs | A | MSESELENOMETHIONINE | A - 146 |
Clusters included in this Subclass |
CLUSTER: HE.4.340 |