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Information on SUBCLASS 3.2.6
Subclass Accession number: 5463
Subclass: 3.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 15.0 +/- 14.9
Average RMSD (Å) : 0.791 +/- 0.226

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XpGXXhX
(φψ)-conformation: aalbpbb
Pattern: xx[adert][ALWY]x[adekqr][dehknqst][GK]x[DEHPST][ilmv][afkltv]x
Conservation:-0.050-0.928-0.4350.295-0.240-0.308-0.1702.931-1.2250.2450.536-0.446-0.205
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1an1_I_241an1   I2436SCIARCNGVSIKSHHHHHTTT--EEEaaaaaaalbxxab
1cbf_*_1701cbf   -170182LTDLAKHKCTIALHHHHHTT-SEEEEaaaaaaalbxbbx
1efv_A_361efv   A4153ITAATRLGGEVSCHHHHHTTTSEEEEaaaaaaavbxbbb
1eye_A_1961eye   A196208LPELVATGIPVLVHHHHHTTSS-BEEaaaaaaavbpbbb
1j6u_A_891j6u   A94106RDTLKREKKEEFAHHHHHHH---EEEaaaaaaalbxbbb
1j7j_A_111j7j   A2638TERYKDSGSEMVLHHHHHTT-S-EEEaaaaaaagxxbbx
1jj2_M_201jj2   M2335RLRLLKSGKPRLVHHHHHHT-S-EEEaaaaaaavbxxxx
1l5j_A_2201l5j   A223235IEALQQKGFPLAYHHHHHTTSS-EEEaaaaaaavbxxbx
1ns5_A_811ns5   A88100LERWKLDGRDVSLHHHHHHH-S-EEEaaaaaaagxpbbb
1pzx_A_451pzx   A4860VYDAMRQGHTVKTHHHHHTTT---EEaaaaaaavbbxbb
2fok_A_1602fok   A165176ILTLLEDGQHLT.HHHHHTT---EE.aaaaaaavpbbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cbf_*_1701cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 182
1cbf_*_1701cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 183
1eye_A_1961eye   A     PMMPTERIN-6-YL-METHYL-MONOPHOSPHATE L - 207
1eye_A_1961eye   A     PMMPTERIN-6-YL-METHYL-MONOPHOSPHATE V - 208
1j6u_A_891j6u   A     MSESELENOMETHIONINE R - 89
1j6u_A_891j6u   A     MSESELENOMETHIONINE Y - 92
1j7j_A_111j7j   A     MGMAGNESIUM ION L - 41
1ns5_A_811ns5   A     MSESELENOMETHIONINE L - 88
1ns5_A_811ns5   A     MSESELENOMETHIONINE W - 91
1ns5_A_811ns5   A     MSESELENOMETHIONINE K - 92
1ns5_A_811ns5   A     MSESELENOMETHIONINE G - 95
1ns5_A_811ns5   A     MSESELENOMETHIONINE R - 96
1ns5_A_811ns5   A     MSESELENOMETHIONINE D - 97
1ns5_A_811ns5   A     MSESELENOMETHIONINE V - 98
1ns5_A_811ns5   A     MSESELENOMETHIONINE L - 101
1ns5_A_811ns5   A     MSESELENOMETHIONINE I - 102
1pzx_A_451pzx   A     PLMPALMITIC ACID T - 60
1pzx_A_451pzx   A     PLMPALMITIC ACID A - 61

Clusters included in this Subclass
CLUSTER: HE.3.113
CLUSTER: HE.4.136
CLUSTER: HE.5.219
CLUSTER: HE.6.172