Logo
Information on SUBCLASS 3.2.7
Subclass Accession number: 5464
Subclass: 3.2.7 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 16.0 +/- 19.3
Average RMSD (Å) : 0.980 +/- 0.235

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXGXXhX
(φψ)-conformation: aalbpbb
Pattern: [aiklv][ACGKLV][EHNPR]xx[GN]xx[fgiltv]xx
Conservation:0.005-0.2990.556-0.8470.0872.786-0.671-0.412-0.431-0.322-0.452
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jji_A_991jji   A105115IARLSNSTVVSHHHHHTSEEEEaaaaalbbbbx
1jmk_C_811jmk   C92102KLEGQGRIVQRHHHHTT--EEEaaaaavxxbab
1jys_A_1751jys   A181191VCHNFNVPFVVHHHHTT--EEEaaaaalbwbbb
1k2x_B_2671k2x   B267277KLPALGGSGGLHHHHTT--EEEaaaaavxbebb
1k6m_A_541k6m   A6474YLNFIGTPTKVHHHHTT--EEEaaaaavbwbbb
1ln4_A_561ln4   A6676IVRETGACNVQHHHHH--EEEEaaaaavxbxab
1mlw_A_2141mlw   A221231LKERTGFSIRPHHHHTS-EEEEaaaaavxbbbx
1ozh_A_571ozh   A6777VGRITGKAGVAHHHHHSS-EEEaaaaavbpxbb
1sjy_A_581sjy   A6676ACEETGLRVRPHHHHHS--EEEaaaaavbxbbw
1toh_*_2731toh   -280290LKERTGFQLRPHHHHTS-EEEEaaaaavxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jys_A_1751jys   A     ADEADENINE S - 196
1jys_A_1751jys   A     ADEADENINE D - 197
1k6m_A_541k6m   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER K - 54
1k6m_A_541k6m   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER T - 55
1k6m_A_541k6m   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Y - 56
1k6m_A_541k6m   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER I - 57
1k6m_A_541k6m   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER N - 76
1ozh_A_571ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE E - 57

Clusters included in this Subclass
CLUSTER: HE.3.55