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Information on SUBCLASS 3.2.8
Subclass Accession number: 5465
Subclass: 3.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 22.6 +/- 23.4
Average RMSD (Å) : 0.900 +/- 0.265

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXchXhh
(φψ)-conformation: aalbpbb
Pattern: [atv]x[akl]x[AERS][alv][astv][DGNT][AKLV][nprt][filmpy][GIV][AGPT][agtv]
Conservation:0.350-1.5050.249-1.8101.1360.2630.2401.4290.486-0.194-1.338-0.3101.261-0.257
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1d_A_491c1d   A6477TLKMAVSNLPMGGGHHHHHHTT-S-EEEaaaaaaalbwbxbb
1gtm_A_791gtm   A90103TWKTAVMDLPYGGGHHHHHHTT-S-EEEaaaaaaalxxbbbb
1hrd_A_1001hrd   A111124AFKDSLTTLPMGGAHHHHHHTSSS--EEaaaaaaavxxbxbb
1hwx_A_1011hwx   A112125TYKCAVVDVPFGGAHHHHHHTT---EEEaaaaaaalbxbxxb
1iir_A_401iir   A4052AERLAEVGVPHVP.HHHHHHTT--EEE.aaaaaaavbpbbx.
1jvb_A_1881jvb   A189202QIAKAVSGATIIGVHHHHHHT--EEEEEaaaaaaavxxbbbb
1k4i_A_1531k4i   A158171VELCRLAGKRPVAVHHHHHHTT--SBEEaaaaaaavxxwbbb
1leh_A_511leh   A6679TYKNAAAGLNLGGGHHHHHHTT-S-EEEaaaaaaavxbbxbb
1pvy_A_1641pvy   A169182VALAELANLVPITTHHHHHHTTS-SEEEaaaaaaavbxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c1d_A_491c1d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 59
1c1d_A_491c1d   A     PHEPHENYLALANINE M - 63
1c1d_A_491c1d   A     PHEPHENYLALANINE K - 66
1c1d_A_491c1d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 66
1c1d_A_491c1d   A     PHEPHENYLALANINE M - 67
1c1d_A_491c1d   A     PHEPHENYLALANINE K - 78
1c1d_A_491c1d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 78
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE L - 107
1hwx_A_1011hwx   A     GLUGLUTAMIC ACID M - 111
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE T - 112
1hwx_A_1011hwx   A     GLUGLUTAMIC ACID K - 114
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE K - 114
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE C - 115
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE A - 116
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 118
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE D - 119
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 120
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE P - 121
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE F - 122
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 123
1hwx_A_1011hwx   A     GLUGLUTAMIC ACID A - 125
1hwx_A_1011hwx   A     GLUGLUTAMIC ACID K - 126
1hwx_A_1011hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE K - 126
1jvb_A_1881jvb   A     MSESELENOMETHIONINE V - 188
1jvb_A_1881jvb   A     MSESELENOMETHIONINE Q - 189
1jvb_A_1881jvb   A     MSESELENOMETHIONINE I - 190
1jvb_A_1881jvb   A     MSESELENOMETHIONINE A - 191
1k4i_A_1531k4i   A     SULSULFATE ANION H - 153
1k4i_A_1531k4i   A     MGMAGNESIUM ION H - 153
1k4i_A_1531k4i   A     SULSULFATE ANION T - 154
1k4i_A_1531k4i   A     MGMAGNESIUM ION T - 154
1k4i_A_1531k4i   A     SULSULFATE ANION E - 155
1k4i_A_1531k4i   A     SULSULFATE ANION I - 172
1k4i_A_1531k4i   A     MGMAGNESIUM ION I - 172
1k4i_A_1531k4i   A     MGMAGNESIUM ION E - 174
1pvy_A_1641pvy   A     R5PRIBOSE-5-PHOSPHATE H - 164
1pvy_A_1641pvy   A     ZNZINC ION H - 164
1pvy_A_1641pvy   A     R5PRIBOSE-5-PHOSPHATE T - 165
1pvy_A_1641pvy   A     ZNZINC ION T - 165
1pvy_A_1641pvy   A     CACALCIUM ION T - 165
1pvy_A_1641pvy   A     R5PRIBOSE-5-PHOSPHATE E - 166
1pvy_A_1641pvy   A     R5PRIBOSE-5-PHOSPHATE M - 167
1pvy_A_1641pvy   A     R5PRIBOSE-5-PHOSPHATE I - 183
1pvy_A_1641pvy   A     ZNZINC ION I - 183
1pvy_A_1641pvy   A     R5PRIBOSE-5-PHOSPHATE E - 185
1pvy_A_1641pvy   A     ZNZINC ION E - 185
1pvy_A_1641pvy   A     CACALCIUM ION E - 185

Clusters included in this Subclass
CLUSTER: HE.4.262
CLUSTER: HE.5.157
CLUSTER: HE.6.51