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Information on SUBCLASS 3.3.1
Subclass Accession number: 5476
Subclass: 3.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 91

Average sequence ID (%) : 13.1 +/- 15.9
Average RMSD (Å) : 0.708 +/- 0.212

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXXhpXh
(φψ)-conformation: aalpabb
Pattern: [acfgiklmtv][adegknqrst]xx[adegknqrs][acfgilmpvwy][adegknqrst]x[acfgilmvwy][acfgilmpvwy]
Conservation:-0.2200.067-0.179-0.8341.415-0.7090.096-1.0472.050-0.638
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aor_A_981aor   A102111LKFAGYDAIVHHHTT-SEEEaaaavbabbb
1aui_A_2621aui   A269278LQHNNLLSILHHHTT-SEEEaaaalbabbb
1avq_A_1521avq   A162171MWVTRKNAWYHHHHT-SEEEaaaavxabbx
1ax4_A_761ax4   A8695KELFNYDYIIHHHH---EEEaaaavxabbb
1b1c_A_91b1c   A1322MKKTGRNIIVHHHTT--EEEaaaavxabbb
1b8o_A_2031b8o   A209218LRNLGADAVGHHHTT-SEEEaaaavxabbb
1bfd_*_41bfd   -1221LRRQGIDTVFHHHTT--EEEaaaavxabbx
1c4x_A_811c4x   A96105MNHFGIEKSHHHHHT-SSEEaaaavxabbx
1c7g_A_751c7g   A8594KELFGFKHIVHHHH--SEEEaaaavxabbb
1cgt_*_651cgt   -6675FSDLGVTALWHHHHT--EEEaaaavxabbb
1chm_A_211chm   A3544LAAENIDAAIHHHTT-SEEEaaaalxabbb
1ciu_*_651ciu   -6675LTGMGVTAIWHHHHT--EEEaaaavxabbb
1coz_A_771coz   A8190IIDHNIDVFVHHHTT-SEEEaaaalxabbb
1cvl_*_611cvl   -7382LAATGATKVNHHHH--S-EEaaaavxabbb
1dnp_A_801dnp   A91100CAENSVTHLFHHHHT--EEEaaaalxabbb
1doz_A_2351doz   A243252FEQKGYQAFVHHHH--SEEEaaaavpabbb
1dp4_A_641dp4   A7382KWEHSPAVFLHHHH--SEEEaaaalxabbb
1e6u_A_441e6u   A5160FASERIDQVYHHHH--SEEEaaaalxabbb
1euc_A_641euc   A6877KEQTGATASVHHHH---EEEaaaavpabbb
1f7u_A_3471f7u   A359368YEKYHFDKMIHHHH--SEEEaaaalxabbb
1fit_*_521fit   -7079EKHFHGTSLTHHHTT-SEEEaaaalxabbb
1g2a_A_251g2a   A3847MYAEEGIGLAHHHTT-SEEEaaaalbabbb
1g2o_A_1911g2o   A197206LQTLGADLVGHHHHT-SEEEaaaavxabbb
1g61_A_21691g61   A21762185KSLFKVEYIGHHHHT-SEEEaaaalbabbb
1gr0_A_1301gr0   A134143LKEAKVDVLVHHHTT-SEEEaaaalxabbb
1h0c_A_1361h0c   A143152LAQHKPVLLFHHHH--SEEEaaaalxabbb
1h3g_A_1541h3g   A157166IAGLGFTQLWHHHHT--EEEaaaagxabbb
1h65_A_191h65   A3241LKQEDVNSLTHHHTT--EEEaaaavxabbb
1hdg_O_841hdg   O8493WKDLGVDFVIHHHHT--EEEaaaavxabbx
1i0a_A_2131i0a   A217225RSELDMTSI.HHHHT-SEE.aaaavbabb.
1iho_A_1261iho   A138147FNLVQPDIACHHHH--SEEEaaaalxabbb
1itx_A_1771itx   A191200LRKYNFDGVDHHHHT-SEEEaaaalxabbb
1iwe_A_3441iwe   A351360HMVNGFTALAHHHH--SEEEaaaalpabbb
1izo_A_241izo   A2938TERYNSDLFQHHHTTSSEEEaaaalbabbb
1j0h_A_1821j0h   A185194LVDLGITGIYHHHHT--EEEaaaagxabbb
1j0x_O_841j0x   O8493WGDAGAEYVVHHHHT-SEEEaaaavxabbx
1j3w_A_111j3w   A2433LRETGARYALHHHH--SEEEaaaavxabbb
1j4a_A_601j4a   A6675LADNGITKMSHHHTT--EEEaaaavbabbb
1j5v_A_2181j5v   A229238TRKYNFKTVGHHHH--SEEEaaaalxabbb
1jdp_A_1361jdp   A147156FRHHHWSRAAHHHHT--EEEaaaavxabbb
1jf9_A_2121jf9   A212221VQALDCDFYVHHHHT-SEEEaaaavxabbb
1jf9_A_3661jf9   A369378MAYYNVPAMCHHHTT-S-EEaaaalbabbx
1ji2_A_1791ji2   A182191LEELGVTALYHHHHT-SEEEaaaagxabbb
1jk7_A_2291jk7   A236245LHKHDLDLICHHHTT-SEEEaaaalbabbb
1jwi_B_471jwi   B5867LEKMRIVLVWHHTT---EEEaaaalbabbx
1k7w_A_2151k7w   A219227RSELEFASI.HHHHT-SEE.aaaalxabb.
1kcf_A_911kcf   A106115HEKFNPHVILHHHH--SEEEaaaalxabbb
1kew_A_621kew   A6978FEQYQPDAVMHHHH--SEEEaaaalxabbb
1kw3_B_911kw3   B94103MQQRKVMGLLHHHHT-SEEEaaaavbabbb
1kzf_A_1181kzf   A130139AQNNAYGNIYHHHTT-SEEEaaaavbabbx
1lkd_A_921lkd   A95104ARRRGVTGLIHHHHT-SEEEaaaavbabbb
1lme_A_241lme   A3746MYHYDGVGLAHHHTT-SEEEaaaavxabbb
1m1n_B_1281m1n   B139148KATYKPDMIAHHHH--SEEEaaaalxabbb
1m22_A_4381m22   A442451LAAHQLDALVHHHTT-SEEEaaaalxabbb
1m6y_A_851m6y   A8998LKTLGIEKVDHHHTT-S-EEaaaavbabba
1m73_E_2031m73   E209218LQKLGADAVGHHHHT-SEEEaaaavxabbb
1n2z_A_711n2z   A7483IVALKPDLVIHHHT--SEEEaaaalxabbx
1nrz_A_161nrz   A2332SKVANAQRIIHHHHT-SEEEaaaalxabxb
1nu0_A_421nu0   A4958LKEWQPDEIIHHHH--S-EEaaaalxabbb
1o0s_A_3901o0s   A394403IRAARPGALIHHHH--SEEEaaaalxabbb
1o50_A_1021o50   A109118MIDNNIQEMPHHHHT-SEEEaaaalbabbx
1od6_A_741od6   A7887VRRVGAQAIVHHHTT-SEEEaaaavxabbb
1ozh_A_131ozh   A2130LEAQGVRQVFHHHHT--EEEaaaavpabbb
1p1j_A_2161p1j   A231240KEENALDKVIHHHTT-S-EEaaaalxabbb
1p9r_A_1321p9r   A134143AIKEGASDIHHHHHT-SEEEaaaavxabbb
1pfk_A_791pfk   A8998LKKRGIDALVHHHTT--EEEaaaavxabbb
1pox_A_131pox   A2130LEAWGVDHLYHHHTT--EEEaaaavxabbb
1pv9_A_91pv9   A1221MDENSIDRVFHHHTT--EEEaaaalxabbb
1pvd_A_61pvd   A1423LKQVNVNTVFHHHTT--EEEaaaalbabbb
1pvm_A_221pvm   A2938MNENHLYGLVHHHHT--EEEaaaavbabbx
1pvm_A_881pvm   A95104LSENGLERCAHHHHT-SEEEaaaavbabbx
1qf5_A_3121qf5   A319328VQLNSLSGFCHHHHT--EEEaaaalpabbb
1qgu_B_1261qgu   B137146SALYKPEIIAHHHH--SEEEaaaalxabbb
1qho_A_581qho   A6170LKQLGVTTIWHHHHT--EEEaaaagxabxx
1qjc_A_741qjc   A7887ARNQHATVLIHHHTT--EEEaaaalxabbx
1qtr_A_881qtr   A99108REMAGVEQWLHHHHT-SSEEaaaavbabbx
1rj9_B_2261rj9   B234243DEKVGVTGLVHHHH---EEEaaaavxabbb
1rl4_A_871rl4   A100109MYESKGIGLSHHHTT-SEEEaaaalxabbb
1s4n_A_2601s4n   A264273MQENEKVYGFHHHTT--EEEaaaalbabbb
1s7j_A_2071s7j   A215224GKRLNQTTLSHHHHT-SEEEaaaavbabbb
1tco_A_2621tco   A269278LQHNNLLSILHHHHT-SEEEaaaalbabbx
1ui0_A_1051ui0   A109118IELIAPQIIVHHHH--SEEEaaaalxabbb
1upa_A_141upa   A2231LRDHGVGKVFHHHTT--EEEaaaavxabbx
1ve9_A_1671ve9   A170179VARGGADVIIHHTTT-SEEEaaaagbabbb
1vhr_A_481vhr   A5160LQKLGITHVLHHHHT--EEEaaaavxabbb
1vjp_A_1081vjp   A119128WTELDPDVIVHHHH--SEEEaaaavxabbb
1xva_A_421xva   A5261LRQHGCHRVLHHHTT--EEEaaaavxaxbb
1zpd_A_51zpd   A1322LVQIGLKHHFHHHTT-SEEEaaaagxabbb
2dkb_*_1112dkb   -123132KLVTGKYEIVHHHHS--EEEaaaavbaxbb
2gsa_A_1232gsa   A135144RAYTGRDKIIHHHH---EEEaaaavbaxbb
3pfk_*_793pfk   -8998LKKHGIQGLVHHHHT--EEEaaaavxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1avq_A_1521avq   A     PO4PHOSPHATE ION Q - 157
1avq_A_1521avq   A     PO4PHOSPHATE ION S - 161
1b1c_A_91b1c   A     FMNFLAVIN MONONUCLEOTIDE G - 25
1b8o_A_2031b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL V - 217
1b8o_A_2031b8o   A     PO4PHOSPHATE ION G - 218
1b8o_A_2031b8o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL G - 218
1coz_A_771coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE V - 90
1coz_A_771coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE M - 91
1coz_A_771coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE G - 92
1dnp_A_801dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID F - 80
1doz_A_2351doz   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Q - 236
1e6u_A_441e6u   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 61
1f7u_A_3471f7u   A     ARGARGININE Y - 347
1f7u_A_3471f7u   A     ARGARGININE D - 351
1f7u_A_3471f7u   A     ARGARGININE R - 358
1f7u_A_3471f7u   A     ARGARGININE Y - 369
1f7u_A_3471f7u   A     ARGARGININE V - 370
1fit_*_521fit   *     MSESELENOMETHIONINE L - 58
1fit_*_521fit   *     MSESELENOMETHIONINE F - 59
1fit_*_521fit   *     FRUFRUCTOSE K - 71
1fit_*_521fit   *     FRUFRUCTOSE H - 72
1fit_*_521fit   *     FRUFRUCTOSE F - 73
1fit_*_521fit   *     FRUFRUCTOSE H - 74
1fit_*_521fit   *     MSESELENOMETHIONINE F - 80
1g2a_A_251g2a   A     BB2ACTINONIN E - 41
1g2a_A_251g2a   A     BB2ACTINONIN E - 42
1g2a_A_251g2a   A     BB2ACTINONIN G - 43
1g2a_A_251g2a   A     BB2ACTINONIN I - 44
1g2a_A_251g2a   A     BB2ACTINONIN G - 45
1g2a_A_251g2a   A     BB2ACTINONIN L - 46
1g2a_A_251g2a   A     BB2ACTINONIN A - 47
1g2o_A_1911g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL V - 205
1g2o_A_1911g2o   A     PO4PHOSPHATE ION G - 206
1g2o_A_1911g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL G - 206
1gr0_A_1301gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 144
1h0c_A_1361h0c   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 154
1h3g_A_1541h3g   A     MSESELENOMETHIONINE L - 154
1h3g_A_1541h3g   A     MSESELENOMETHIONINE D - 155
1h3g_A_1541h3g   A     MSESELENOMETHIONINE I - 157
1h3g_A_1541h3g   A     MSESELENOMETHIONINE A - 158
1h3g_A_1541h3g   A     MSESELENOMETHIONINE F - 162
1h3g_A_1541h3g   A     CACALCIUM ION F - 162
1h3g_A_1541h3g   A     MSESELENOMETHIONINE T - 163
1h3g_A_1541h3g   A     CACALCIUM ION T - 163
1h3g_A_1541h3g   A     MSESELENOMETHIONINE Q - 164
1h3g_A_1541h3g   A     CACALCIUM ION Q - 164
1h3g_A_1541h3g   A     MSESELENOMETHIONINE L - 165
1h3g_A_1541h3g   A     CACALCIUM ION L - 165
1h3g_A_1541h3g   A     MSESELENOMETHIONINE W - 166
1h65_A_191h65   A     MSESELENOMETHIONINE T - 41
1h65_A_191h65   A     MSESELENOMETHIONINE L - 43
1hdg_O_841hdg   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 94
1iho_A_1261iho   A     EDO1,2-ETHANEDIOL G - 129
1iho_A_1261iho   A     EDO1,2-ETHANEDIOL V - 130
1iho_A_1261iho   A     EDO1,2-ETHANEDIOL I - 133
1iho_A_1261iho   A     EDO1,2-ETHANEDIOL V - 134
1iho_A_1261iho   A     EDO1,2-ETHANEDIOL L - 137
1iho_A_1261iho   A     EDO1,2-ETHANEDIOL F - 148
1itx_A_1771itx   A     GOLGLYCEROL N - 195
1itx_A_1771itx   A     GOLGLYCEROL D - 200
1itx_A_1771itx   A     GOLGLYCEROL D - 202
1j5v_A_2181j5v   A     MSESELENOMETHIONINE R - 218
1j5v_A_2181j5v   A     MSESELENOMETHIONINE Y - 221
1j5v_A_2181j5v   A     MSESELENOMETHIONINE A - 222
1j5v_A_2181j5v   A     MSESELENOMETHIONINE A - 225
1j5v_A_2181j5v   A     MSESELENOMETHIONINE Y - 232
1j5v_A_2181j5v   A     MSESELENOMETHIONINE F - 234
1j5v_A_2181j5v   A     MSESELENOMETHIONINE V - 237
1j5v_A_2181j5v   A     MSESELENOMETHIONINE G - 238
1j5v_A_2181j5v   A     MSESELENOMETHIONINE I - 239
1jf9_A_2121jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 223
1jf9_A_3661jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 379
1kew_A_621kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 79
1lme_A_241lme   A     OCSCYSTEINESULFONIC ACID G - 44
1m1n_B_1281m1n   B     CLFFE(8)-S(7) CLUSTER T - 151
1m6y_A_851m6y   A     MSESELENOMETHIONINE I - 100
1n2z_A_711n2z   A     PG4TETRAETHYLENE GLYCOL D - 80
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 45
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 48
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 49
1nu0_A_421nu0   A     MSESELENOMETHIONINE W - 52
1nu0_A_421nu0   A     MSESELENOMETHIONINE Q - 53
1nu0_A_421nu0   A     MSESELENOMETHIONINE P - 54
1nu0_A_421nu0   A     MSESELENOMETHIONINE D - 55
1nu0_A_421nu0   A     MSESELENOMETHIONINE E - 56
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 57
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 58
1nu0_A_421nu0   A     MSESELENOMETHIONINE V - 59
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 63
1o0s_A_3901o0s   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 404
1od6_A_741od6   A     PNS4'-PHOSPHOPANTETHEINE L - 74
1od6_A_741od6   A     PNS4'-PHOSPHOPANTETHEINE V - 75
1od6_A_741od6   A     PNS4'-PHOSPHOPANTETHEINE K - 88
1ozh_A_131ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE I - 32
1p1j_A_2161p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE W - 243
1p9r_A_1321p9r   A     MSESELENOMETHIONINE G - 132
1p9r_A_1321p9r   A     MSESELENOMETHIONINE E - 133
1p9r_A_1321p9r   A     MSESELENOMETHIONINE A - 134
1p9r_A_1321p9r   A     MSESELENOMETHIONINE I - 135
1p9r_A_1321p9r   A     MSESELENOMETHIONINE S - 140
1p9r_A_1321p9r   A     MSESELENOMETHIONINE D - 141
1p9r_A_1321p9r   A     MSESELENOMETHIONINE I - 142
1p9r_A_1321p9r   A     MSESELENOMETHIONINE H - 143
1p9r_A_1321p9r   A     MSESELENOMETHIONINE I - 144
1pfk_A_791pfk   A     ADPADENOSINE-5'-DIPHOSPHATE R - 82
1pfk_A_791pfk   A     ADPADENOSINE-5'-DIPHOSPHATE G - 101
1qf5_A_3121qf5   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 329
1qf5_A_3121qf5   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 330
1qgu_B_1261qgu   B     CLFFE(8)-S(7) CLUSTER T - 149
1rj9_B_2261rj9   B     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER L - 244
1rj9_B_2261rj9   B     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 245
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID K - 104
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID G - 105
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID I - 106
1rl4_A_871rl4   A     BL52-{N'-[2-(5-AMINO-1-PHENYLCARBAMOYL-PENTYLCARBAMOYL)-HEXYL]-HYDRAZINOMETHYL}-HEXANOIC ACID(5-AMINO-1-PHENYLCARBAMOYL-PENTYL)-AMIDE I - 106
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID G - 107
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID L - 108
1rl4_A_871rl4   A     COCOBALT (II) ION S - 109
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID S - 109
1upa_A_141upa   A     MSESELENOMETHIONINE K - 29
1upa_A_141upa   A     MSESELENOMETHIONINE F - 31
1vjp_A_1081vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 129
1xva_A_421xva   A     SAMS-ADENOSYLMETHIONINE Y - 44
1xva_A_421xva   A     SAMS-ADENOSYLMETHIONINE D - 62
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE G - 111
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE A - 112
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE E - 113
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE S - 114
2dkb_*_1112dkb   *     PLPPYRIDOXAL-5'-PHOSPHATE N - 115
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE G - 123
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE T - 124
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE E - 125
2gsa_A_1232gsa   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 125
2gsa_A_1232gsa   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE C - 127
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od6_A_741od6   A AC1PNS BINDING SITE FOR CHAIN AL - 74
1od6_A_741od6   A AC4SO4 BINDING SITE FOR CHAIN AQ - 84

Clusters included in this Subclass
CLUSTER: HE.2.21
CLUSTER: HE.3.13
CLUSTER: HE.3.94
CLUSTER: HE.4.134
CLUSTER: HE.4.5
CLUSTER: HE.5.28