ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.3.3

Subclass Accession number: 8320
Subclass: 3.3.3

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 9.4 +/- 12.9
Average RMSD (Å) : 0.654 +/- 0.181

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	XppXphX
(φψ)-conformation:	aapaabb

Pattern:	x	[aeknqrs]	[aflmtv]	x	[aekqrst]	[dknrsty]	[DEKPQS]	[dhknry]	[CFIMTV]	x	[fgitv]
Conservation:	-1.575	0.076	0.239	-0.882	0.817	0.227	1.621	0.404	0.934	-1.461	-0.399

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cjc_A_61	1cjc	A	66	76	TQTARSDRCAF	HHHHTSTTEEE	aaaaaxaabbb
1dmu_A_91	1dmu	A	96	106	RLVSQREDITV	HHHHTSTT-EE	aaaaaxaabbb
1f6k_A_148	1f6k	A	152	162	GELYKNPKVLG	HHHHTSTTEEE	aaaaaxaaxae
1fl2_A_394	1fl2	A	398	408	DKLRSLKNVDI	HHHHT-TTEEE	aaaaaxaabbb
1fnb_*_255	1fnb	-	259	269	WEMLKKDNTYV	HHHTTSTTEEE	aaaaaxaabbb
1gnt_A_276	1gnt	A	276	286	PAFKKYPHFVG	HHHHT-TTEEE	aaaaabaaxae
1ibj_A_387	1ibj	A	392	402	HLVETTKYFSI	HHHHH-SSSEE	aaaaapaabxx
1lqt_A_64	1lqt	A	68	78	EKTAEDPRFRF	HHHHTSTTEEE	aaaaaxaabbb
1odz_A_392	1odz	A	397	406	QAFYADEFTA.	HHHHHSTTEE.	aaaaaxaaxb.
1ogi_A_244	1ogi	A	248	258	WQLIKNQKTHT	HHHHTSTTEEE	aaaaaxaaxbb
1r6x_A_20	1r6x	A	24	34	LSEAQSSDILV	HHHHT-TTSEE	aaaaaxaaxxb
1vdc_*_184	1vdc	-	188	198	QRALSNPKIDV	HHHHT-TTEEE	aaaaaxaabbx
1zpd_A_30	1zpd	A	34	44	DNLLLNKNMEQ	HHHHT-TTSEE	aaaaaxaabbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dmu_A_91	1dmu	A	CACALCIUM ION	V - 98
1dmu_A_91	1dmu	A	CACALCIUM ION	S - 99
1dmu_A_91	1dmu	A	CACALCIUM ION	Q - 100
1dmu_A_91	1dmu	A	CACALCIUM ION	R - 101
1dmu_A_91	1dmu	A	CACALCIUM ION	E - 102
1dmu_A_91	1dmu	A	CACALCIUM ION	D - 103
1dmu_A_91	1dmu	A	CACALCIUM ION	I - 104
1dmu_A_91	1dmu	A	CACALCIUM ION	T - 105
1lqt_A_64	1lqt	A	ACTACETATE ION	F - 67
1lqt_A_64	1lqt	A	ACTACETATE ION	E - 68
1lqt_A_64	1lqt	A	ACTACETATE ION	A - 71
1lqt_A_64	1lqt	A	ACTACETATE ION	F - 76
1lqt_A_64	1lqt	A	ACTACETATE ION	R - 77
1lqt_A_64	1lqt	A	ACTACETATE ION	F - 78

Clusters included in this Subclass

CLUSTER: HE.3.186

CLUSTER: HE.3.208

CLUSTER: HE.4.111

CLUSTER: HE.5.135

CLUSTER: HE.5.203