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Information on SUBCLASS 3.5.1
Subclass Accession number: 5501
Subclass: 3.5.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 58

Average sequence ID (%) : 16.1 +/- 17.7
Average RMSD (Å) : 0.593 +/- 0.231

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXcXphX
(φψ)-conformation: aalppbb
Pattern: x[acfilmvwy]xxx[adegknqr]x[dehknpqrst][afgilmpvwy]xx
Conservation:-0.1730.461-0.695-0.368-0.7132.4900.0900.888-0.850-0.936-0.195
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aw9_*_131aw9   -2131VLNEKGLDFEIHHHHTT--EEEaaaaalxxbbx
1b5p_A_151b5p   A2535ELRRQGVDLVAHHHHTT---EEaaaaavxxbxx
1bia_*_331bia   -4252TLRDWGVDVFTHHHHTT---EEaaaaavxxbxb
1bou_B_1001bou   B109119SLILDEFDMTIHHHHTT---EEaaaaavbxxbx
1byk_A_1921byk   A201211FCKAHKLHPVAHHHHTT---EEaaaaalbxwbb
1ccw_B_1871ccw   B203213FYEEQGVHINRHHHHTT---EEaaaaavbxbxb
1dbx_A_31dbx   A717LLKKQKIPFILHHHHHT---EEaaaaavxxbbx
1dug_A_141dug   A1929LLEYLEEKYEEHHHHHT---EEaaaaavxxbbb
1e6b_A_181e6b   A2636ALALKGLDYEYHHHHTT---EEaaaaavxxbxx
1ev9_A_171ev9   A2232LLAAAGVEFDEHHHHHT---EEaaaaavbxbbb
1eye_A_1161eye   A119129LLAEADVPWVLHHHHHT--EEEaaaaalbxbxx
1f2e_A_121f2e   A1727ALRETGADFEAHHHHHT---EEaaaaavxxbbx
1f3b_A_161f3b   A2131LLAAAGVEFEEHHHHTT---EEaaaaavxxbbb
1fw1_A_151fw1   A2333ALALKGIDYKTHHHHTT---EEaaaaavxxbxb
1g6s_A_1991g6s   A207217LMKTFGVEIENHHHHTT---EEaaaaavbbbbx
1gee_A_1181gee   A130140YFVENDIKGTVHHHHTT---EEaaaaalbxxbb
1glq_A_151glq   A2030LLADQGQSWKEHHHHTT---EEaaaaavxbbxb
1gne_*_141gne   -1929LLEYLEEKYEEHHHHTT---EEaaaaalbxbbx
1gnw_A_121gnw   A2030ALHEKNLDFELHHHHTT---EEaaaaalbxbbx
1gxs_B_3381gxs   B343353ELIQAGLRVWVHHHHTT---EEaaaaavxxbbb
1h05_A_551h05   A6474QAADAAEPVILHHHHHT--EEEaaaaalbxbbb
1h5q_A_1221h5q   A134144LWLQKQQKGSIHHHHHT--EEEaaaaavbxbbb
1h75_A_121h75   A2030AMENRGFDFEMHHHHTT---EEaaaaavxxbbb
1i52_A_1911i52   A194204ALEYCGFHPQLHHHHTT---EEaaaaavxbpxb
1i7q_B_861i7q   B91101IVEAYGGQVGQHHHHTT-EEEEaaaaagxbbbp
1itw_A_5211itw   A530540ARIREGKDTISHHHHTT---EEaaaaavbbbxx
1ixc_A_2021ixc   A209219LFKHAGIEPRIHHHHTT---EEaaaaavbxxxb
1j09_A_1311j09   A136146ERARRGEPHVIHHHHTT---EEaaaaavxxbbb
1j5y_A_381j5y   A4757YLRSLGYNIVAHHHHHT---EEaaaaagxxxbx
1je0_A_1321je0   A141151SFSKRNLKYYVHHHHTT--EEEaaaaalbxbbb
1jlv_A_101jlv   A1828TAAAVGVELNLHHHHTT---EEaaaaavxxbxx
1k0m_A_251k0m   A3343VLWLKGVTFNVHHHHHT---EEaaaaavxxbbb
1k3y_A_171k3y   A2232LLAAAGVEFEEHHHHHT---EEaaaaavxxbbb
1k9s_A_1311k9s   A140150AAKALGIDARVHHHHTT--EEEaaaaavbxbxb
1kw3_B_691kw3   B7888KLRQAGVAFTRHHHHHT---EEaaaaavxxbbx
1l1y_A_6241l1y   A629639QAYLRGEAPVLHHHHTT---EEaaaaavbxxbb
1l3i_A_1461l3i   A146156CLRDLGFDVNIHHHHTT---EEaaaaavxxxbb
1l8a_A_6041l8a   A613623AAGDQQARGFLHHHHTT---EEaaaaalxbbbb
1m7g_A_381m7g   A4959LVRDRRVHAYRHHHHH---EEEaaaaavxxbbx
1n2a_A_121n2a   A1727TLRESGKDFTLHHHHTT---EEaaaaavxxbbx
1nh8_A_691nh8   A7181LVCDSGAQVREHHHHHT--EEEaaaaavxxbxx
1nni_1_151nni   12333IAALYHTDLIDHHHHHT--EEEaaaaalbxbbx
1ny1_A_811ny1   A8797VLKKHRVTGTFHHHHTT---EEaaaaalbxbbb
1o4s_A_151o4s   A2333ALIKKGEDVINHHHHTT---EEaaaaavxxxxx
1oc2_A_2011oc2   A207217TNILAGIKPKLHHHHHT---EEaaaaavbxpbb
1oe8_A_181oe8   A2333TLVAAGVNYEDHHHHTT---EEaaaaavbxbbx
1pmt_*_121pmt   -1727VLRETGLDFSIHHHHTT---EEaaaaalbxbbb
1qcz_A_251qcz   A2939IFEILNVPHHVHHHHHT--EEEaaaaalbwbbb
1qgd_A_4421qgd   A447457MAALMKQRQVMHHHHTT---EEaaaaalbxbxb
1qyc_A_1271qyc   A140150AIEAEGIPYTYHHHHHT--BEEaaaaavxwbbb
1r6d_A_1501r6d   A165175YHRTYGLDVRIHHHHH---EEEaaaaavxxbbb
1rif_A_681rif   A7181FCDNFGYKAWIHHHHTT--EEEaaaaalxbbbb
1rxy_A_1341rxy   A143153AAKSIGATTHVHHHHTT--EEEaaaaavxxbbb
1v2a_A_101v2a   A1828LAKKLGITLNLHHHHHT---EEaaaaavxbbbp
2gsq_*_152gsq   -2030VLAAHGEEFTDHHHHTT---EEaaaaavbxbxb
2gsr_A_152gsr   A2030LLADQDQSWKEHHHHTT---EEaaaaavxbbxb
2uag_A_152uag   A2333FFLARGVTPRVHHHTTT---EEaaaaavbxxbb
7aat_A_2387aat   A242252HFIEQGIDVVLHHHHTT---EEaaaaavxxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aw9_*_131aw9   *     CDCADMIUM ION G - 26
1aw9_*_131aw9   *     CDCADMIUM ION L - 27
1aw9_*_131aw9   *     CDCADMIUM ION D - 28
1byk_A_1921byk   A     T6PTREHALOSE-6-PHOSPHATE R - 194
1ccw_B_1871ccw   B     TARD(-)-TARTARIC ACID E - 214
1eye_A_1161eye   A     PMMPTERIN-6-YL-METHYL-MONOPHOSPHATE V - 128
1eye_A_1161eye   A     PMMPTERIN-6-YL-METHYL-MONOPHOSPHATE M - 130
1fw1_A_151fw1   A     GSHGLUTHATHIONE S - 15
1fw1_A_151fw1   A     GSHGLUTHATHIONE C - 16
1fw1_A_151fw1   A     GSHGLUTHATHIONE S - 17
1fw1_A_151fw1   A     GSHGLUTHATHIONE R - 19
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE Y - 200
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE I - 203
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE T - 204
1g6s_A_1991g6s   A     FMTFORMIC ACID T - 210
1gee_A_1181gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 143
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE I - 12
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE A - 13
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE T - 14
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE R - 16
1h5q_A_1221h5q   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 147
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP L - 86
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP G - 87
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP Q - 89
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP H - 107
1jlv_A_101jlv   A     GSHGLUTHATHIONE A - 10
1jlv_A_101jlv   A     GSHGLUTHATHIONE P - 11
1k3y_A_171k3y   A     GOLGLYCEROL S - 18
1l3i_A_1461l3i   A     MSESELENOMETHIONINE C - 146
1l3i_A_1461l3i   A     MSESELENOMETHIONINE L - 147
1l3i_A_1461l3i   A     MSESELENOMETHIONINE R - 148
1l3i_A_1461l3i   A     MSESELENOMETHIONINE D - 149
1l3i_A_1461l3i   A     MSESELENOMETHIONINE V - 154
1l3i_A_1461l3i   A     MSESELENOMETHIONINE N - 155
1l3i_A_1461l3i   A     MSESELENOMETHIONINE I - 156
1l3i_A_1461l3i   A     MSESELENOMETHIONINE T - 157
1l3i_A_1461l3i   A     MSESELENOMETHIONINE E - 158
1l8a_A_6041l8a   A     TDPTHIAMIN DIPHOSPHATE R - 606
1l8a_A_6041l8a   A     TDPTHIAMIN DIPHOSPHATE D - 609
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE K - 38
1m7g_A_381m7g   A     ADXADENOSINE-5'-PHOSPHOSULFATE K - 38
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE S - 39
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE T - 40
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE L - 41
1nh8_A_691nh8   A     AMPADENOSINE MONOPHOSPHATE D - 70
1nh8_A_691nh8   A     AMPADENOSINE MONOPHOSPHATE L - 71
1nni_1_151nni   1     FMNFLAVIN MONONUCLEOTIDE R - 15
1nni_1_151nni   1     FMNFLAVIN MONONUCLEOTIDE T - 16
1nni_1_151nni   1     FMNFLAVIN MONONUCLEOTIDE R - 17
1nni_1_151nni   1     MSESELENOMETHIONINE I - 23
1nni_1_151nni   1     MSESELENOMETHIONINE Y - 27
1nni_1_151nni   1     MSESELENOMETHIONINE H - 28
1nni_1_151nni   1     MSESELENOMETHIONINE T - 29
1nni_1_151nni   1     MSESELENOMETHIONINE D - 30
1nni_1_151nni   1     MSESELENOMETHIONINE L - 31
1ny1_A_811ny1   A     MSESELENOMETHIONINE T - 81
1ny1_A_811ny1   A     MSESELENOMETHIONINE L - 85
1ny1_A_811ny1   A     MSESELENOMETHIONINE F - 97
1ny1_A_811ny1   A     MSESELENOMETHIONINE V - 99
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE F - 201
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE I - 202
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE R - 204
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE Q - 205
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE K - 216
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE L - 217
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE Y - 218
1qcz_A_251qcz   A     MSESELENOMETHIONINE F - 25
1qcz_A_251qcz   A     MSESELENOMETHIONINE A - 26
1qcz_A_251qcz   A     MSESELENOMETHIONINE A - 27
1qcz_A_251qcz   A     MSESELENOMETHIONINE E - 28
1qcz_A_251qcz   A     MSESELENOMETHIONINE V - 39
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 151
1r6d_A_1501r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE Y - 151
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 155
1r6d_A_1501r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE K - 155
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 177
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE C - 178
1r6d_A_1501r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE C - 178
1rif_A_681rif   A     AUGOLD ION I - 68
1rif_A_681rif   A     AUGOLD ION K - 69
1rif_A_681rif   A     AUGOLD ION K - 70
1rif_A_681rif   A     AUGOLD ION F - 71
1rif_A_681rif   A     AUGOLD ION C - 72
1rif_A_681rif   A     AUGOLD ION D - 73
1rif_A_681rif   A     AUGOLD ION Y - 77
1rif_A_681rif   A     AUGOLD ION K - 78
1rif_A_681rif   A     AUGOLD ION A - 79
1rif_A_681rif   A     AUGOLD ION I - 81
1rxy_A_1341rxy   A     GOLGLYCEROL F - 134
1rxy_A_1341rxy   A     GOLGLYCEROL T - 137
1v2a_A_101v2a   A     GTSGLUTATHIONE SULFONIC ACID P - 10
1v2a_A_101v2a   A     GTSGLUTATHIONE SULFONIC ACID P - 11
1v2a_A_101v2a   A     GTSGLUTATHIONE SULFONIC ACID C - 12
2uag_A_152uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE L - 15
2uag_A_152uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE T - 16
2uag_A_152uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE G - 17
2uag_A_152uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE M - 34
2uag_A_152uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE D - 35
7aat_A_2387aat   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 253
7aat_A_2387aat   A     PLPPYRIDOXAL-5'-PHOSPHATE Q - 254
7aat_A_2387aat   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 255
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h05_A_551h05   A SO3SO4 BINDING SITE FOR CHAIN AW - 61
1h05_A_551h05   A SO3SO4 BINDING SITE FOR CHAIN AQ - 64
1h05_A_551h05   A SO1SO4 BINDING SITE FOR CHAIN AN - 75
1h75_A_121h75   A DISREDOX-ACTIVE DISULFIDEC - 14

Clusters included in this Subclass
CLUSTER: HE.3.109
CLUSTER: HE.3.61
CLUSTER: HE.4.8
CLUSTER: HE.5.5
CLUSTER: HE.6.4