ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.5.2

Subclass Accession number: 216
Subclass: 3.5.2

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 10.6 +/- 13.4
Average RMSD (Å) : 0.910 +/- 0.260

Consensus geometry

d (Å): 15

delta (°): 135-180

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXcXXXX
(φψ)-conformation:	aalbpbb

Pattern:	[afilvy]	[agqrt]	x	x	x	[ceknrs]	[adekqt]	x	x	[AGKN]	x	[dekpt]	x	x	[acfgivw]	x
Conservation:	0.806	-0.139	-0.516	-0.656	-0.332	-0.005	0.542	-0.589	-0.160	3.281	-0.460	0.636	-0.491	-0.642	-0.709	-0.566

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a1v_A_232	1a1v	A	238	253	FGAYMSKAHGVDPNIR	HHHHHHHHHS---EEE	aaaaaaaaavbbxxbb
1a3c_*_41	1a3c	-	50	65	LAERIEQIEGNPVTVG	HHHHHHHHHSS--EEE	aaaaaaaaavbpbxbb
1b74_A_231	1b74	A	231	246	LQFLIKLILGRDYPVK	HHHHHHHHHSS---EE	aaaaaaaaagbxbwbb
1hc7_A_168	1hc7	A	182	197	YARLAREYAAIPVIEG	HHHHHHHHH----EEE	aaaaaaaaalbwbbxb
1jih_A_233	1jih	A	248	263	IRDSIKDILGYTTSCG	HHHHHHHHH----EEE	aaaaaaaaavxxbbbb
1m55_A_50	1m55	A	63	78	FLYEWNKFSKQESKFF	HHHHHHHHHTS---EE	aaaaaaaaalbxpxbb
1nmo_A_139	1nmo	A	142	157	LASWIEARLGRKPLWC	HHHHHHHHHTS--EEE	aaaaaaaaavbxxxbb
1q7e_A_178	1q7e	A	184	198	AALLHREKTGRGQRV.	HHHHHHHHHS---EE.	aaaaaaaaavbxbxb.
1qlt_A_433	1qlt	A	442	457	VTKKRCQEAGLDFIGT	HHHHHHHHTT----EE	aaaaaaaaavbxxbbb
1qu9_A_84	1qu9	A	90	105	TYEAFFTEHNATFPAR	HHHHHHHHTT----EE	aaaaaaaaalbxxwxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a3c_*_41	1a3c	*	SMSAMARIUM (III) ION	R - 49
1m55_A_50	1m55	A	ZNZINC ION	Q - 73
1m55_A_50	1m55	A	ZNZINC ION	E - 74
1m55_A_50	1m55	A	ZNZINC ION	S - 75
1m55_A_50	1m55	A	ZNZINC ION	K - 76
1m55_A_50	1m55	A	ZNZINC ION	E - 82
1nmo_A_139	1nmo	A	MSESELENOMETHIONINE	E - 141
1q7e_A_178	1q7e	A	MSESELENOMETHIONINE	L - 178
1q7e_A_178	1q7e	A	MSESELENOMETHIONINE	L - 179
1q7e_A_178	1q7e	A	MSESELENOMETHIONINE	I - 180
1q7e_A_178	1q7e	A	MSESELENOMETHIONINE	G - 181
1q7e_A_178	1q7e	A	MSESELENOMETHIONINE	V - 198
1qu9_A_84	1qu9	A	CSPS-PHOSPHOCYSTEINE	F - 84
1qu9_A_84	1qu9	A	CSPS-PHOSPHOCYSTEINE	N - 88
1qu9_A_84	1qu9	A	CSPS-PHOSPHOCYSTEINE	R - 105

Clusters included in this Subclass

CLUSTER: HE.3.114

CLUSTER: HE.5.45