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Information on SUBCLASS 3.5.3
Subclass Accession number: 5503
Subclass: 3.5.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 24

Average sequence ID (%) : 13.0 +/- 16.5
Average RMSD (Å) : 0.767 +/- 0.291

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XhchXhX
(φψ)-conformation: aalppbb
Pattern: xxxxx[dgknr][afgilmv][dehknpqrst][afilpvy]x[dknqrswy]x
Conservation:0.131-0.211-0.049-0.1950.2592.514-0.2510.2090.875-1.093-0.948-1.242
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_B_17711a9x   B17751786LALASGAKTVKMHHHHTT--EEEEaaaaagxbbbxx
1db3_A_1551db3   A170181YRESYGMYACNGHHHHH---EEEEaaaaavxxbbbb
1dcp_A_431dcp   A5667QAEKLDHHPEWFHHHHHT---EEEaaaaavbbxbbb
1g0u_1_761g0u   189100QRRSKMNPLWNAHHHHTT----EEaaaaalbxxxbb
1g6s_A_1991g6s   A207218LMKTFGVEIENQHHHHTT---EEEaaaaavbbbbxx
1gwc_A_161gwc   A2435ALALKGLSYEDVHHHHHT---EEEaaaaavxxbxxb
1i7q_B_861i7q   B91102IVEAYGGQVGQAHHHHTT-EEEEEaaaaagxbbbpx
1iho_A_1531iho   A162173MVADMGFDIEIVHHHHHT---EEEaaaaavxxbxxx
1iyh_A_161iyh   A2132IFAYLDIQYEDHHHHHTT---EEEaaaaalbxbxxx
1jjf_A_2331jjf   A242253YCVANNINHVYWHHHHTT---EEEaaaaalbxbbbb
1lou_A_161lou   A2940AAENYGARVEKVHHHHTT-EEEEEaaaaavxxxabb
1m0u_A_621m0u   A6778LFAYGNQEYEDVHHHHHT---EEEaaaaalxxbxxx
1mop_A_1621mop   A171182LVADFNLDVAVVHHHHTT---EEEaaaaalxxbxxb
1okt_A_171okt   A2233IFAYLGIEYTDKHHHHHT---EEEaaaaavxxbxxx
1oyj_A_161oyj   A2435AMAEKGLEFEYRHHHHHT---EEEaaaaavxxbxxb
1pd2_1_161pd2   12132IFAYLDIKYEDHHHHHTT---EEEaaaaalxxbxxx
1pox_A_4571pox   A459470TQVQYHLPVINVHHHHTT---EEEaaaaalbwbxxb
1q1g_A_1321q1g   A141152CAQELNVPVFNGHHHHTT---EEEaaaaalbwbxbe
1qdl_B_851qdl   B90101IGYAFGAKIRRAHHHHTT-EEEEEaaaaavxbbbxx
1qs0_A_2191qs0   A227238FAHVYRAPVILNHHHHHT--EEEEaaaaalxxbbxx
1qw2_A_641qw2   A6474TSNKVGDIAVR.HHHHTT--BEE.aaaaavxxbbb.
1rpn_A_1491rpn   A164175YRESFGLHASSGHHHHH---EEEEaaaaavxxbbbx
1v2a_A_101v2a   A1829LAKKLGITLNLKHHHHHT---EEEaaaaavxbbbpb
1zpd_A_4501zpd   A452463QMVRLKLPVIIFHHHHTT---EEEaaaaalxwxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_B_17711a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID G - 1771
1a9x_B_17711a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID H - 1772
1a9x_B_17711a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID Q - 1773
1a9x_B_17711a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID L - 1774
1a9x_B_17711a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID M - 1786
1dcp_A_431dcp   A     HBI7,8-DIHYDROBIOPTERIN D - 61
1dcp_A_431dcp   A     HBI7,8-DIHYDROBIOPTERIN H - 62
1dcp_A_431dcp   A     HBI7,8-DIHYDROBIOPTERIN H - 63
1dcp_A_431dcp   A     HBI7,8-DIHYDROBIOPTERIN P - 64
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE Y - 200
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE I - 203
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE T - 204
1g6s_A_1991g6s   A     FMTFORMIC ACID T - 210
1gwc_A_161gwc   A     GTXS-HEXYLGLUTATHIONE P - 16
1gwc_A_161gwc   A     GTXS-HEXYLGLUTATHIONE F - 17
1gwc_A_161gwc   A     GTXS-HEXYLGLUTATHIONE R - 20
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP L - 86
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP G - 87
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP Q - 89
1i7q_B_861i7q   B     ILGGLUTAMYL GROUP H - 107
1iho_A_1531iho   A     EDO1,2-ETHANEDIOL Q - 155
1mop_A_1621mop   A     EOHETHANOL Y - 162
1mop_A_1621mop   A     GOLGLYCEROL Q - 164
1mop_A_1621mop   A     EOHETHANOL L - 165
1mop_A_1621mop   A     EOHETHANOL V - 166
1mop_A_1621mop   A     GOLGLYCEROL I - 168
1mop_A_1621mop   A     EOHETHANOL R - 169
1oyj_A_161oyj   A     GTTGLUTATHIONE P - 16
1oyj_A_161oyj   A     GTTGLUTATHIONE F - 17
1oyj_A_161oyj   A     GTTGLUTATHIONE G - 18
1oyj_A_161oyj   A     GTTGLUTATHIONE R - 20
1pox_A_4571pox   A     MGMAGNESIUM ION F - 472
1pox_A_4571pox   A     TPPTHIAMINE DIPHOSPHATE F - 472
1pox_A_4571pox   A     MGMAGNESIUM ION T - 473
1q1g_A_1321q1g   A     MTI3,4-DIHYDROXY-2-[(METHYLSULFANYL)METHYL]-5-(4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)PYRROLIDINIUM S - 157
1qs0_A_2191qs0   A     MSESELENOMETHIONINE F - 227
1qs0_A_2191qs0   A     MSESELENOMETHIONINE Y - 231
1qs0_A_2191qs0   A     MSESELENOMETHIONINE A - 233
1qs0_A_2191qs0   A     MSESELENOMETHIONINE P - 234
1qs0_A_2191qs0   A     MSESELENOMETHIONINE V - 235
1qs0_A_2191qs0   A     MGMAGNESIUM ION V - 240
1qs0_A_2191qs0   A     TDPTHIAMIN DIPHOSPHATE V - 240
1qs0_A_2191qs0   A     MGMAGNESIUM ION N - 241
1qw2_A_641qw2   A     MSESELENOMETHIONINE T - 64
1qw2_A_641qw2   A     MSESELENOMETHIONINE S - 65
1qw2_A_641qw2   A     MSESELENOMETHIONINE N - 66
1qw2_A_641qw2   A     MSESELENOMETHIONINE K - 67
1qw2_A_641qw2   A     MSESELENOMETHIONINE A - 72
1qw2_A_641qw2   A     MSESELENOMETHIONINE V - 73
1qw2_A_641qw2   A     MSESELENOMETHIONINE R - 74
1rpn_A_1491rpn   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 150
1rpn_A_1491rpn   A     GDPGUANOSINE-5'-DIPHOSPHATE Y - 150
1rpn_A_1491rpn   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 154
1rpn_A_1491rpn   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 175
1rpn_A_1491rpn   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 176
1rpn_A_1491rpn   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 177
1v2a_A_101v2a   A     GTSGLUTATHIONE SULFONIC ACID P - 10
1v2a_A_101v2a   A     GTSGLUTATHIONE SULFONIC ACID P - 11
1v2a_A_101v2a   A     GTSGLUTATHIONE SULFONIC ACID C - 12
1zpd_A_4501zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER I - 465
1zpd_A_4501zpd   A     MGMAGNESIUM ION I - 465
1zpd_A_4501zpd   A     MGMAGNESIUM ION N - 466
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gwc_A_161gwc   A AC1GTX BINDING SITE FOR CHAIN AF - 17

Clusters included in this Subclass
CLUSTER: HE.4.119
CLUSTER: HE.4.49
CLUSTER: HE.5.44
CLUSTER: HE.6.99