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Information on SUBCLASS 3.5.4
Subclass Accession number: 5504
Subclass: 3.5.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 9.4 +/- 14.4
Average RMSD (Å) : 0.660 +/- 0.203

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXhX
(φψ)-conformation: aalppbb
Pattern: xxx[acgilwy][adekr]xx[degknqs]x[dknprt][acfgilvy]x
Conservation:-2.2040.644-0.9320.3280.8450.253-0.5520.853-0.3510.6911.274-0.849
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1atg_*_121atg   -2031GQFAKQTGHAVVHHHHHHH---EEaaaaaaavxbbb
1byf_A_361byf   A4354LAFTEVKGHDYWHHHHHHHT--EEaaaaaaavbxbx
1h5q_A_1221h5q   A132143AKLWLQKQQKGSHHHHHHHT--EEaaaaaaavbxbb
1jrl_A_1151jrl   A126137PKLAKEFDVPLLHHHHHHTT--EEaaaaaaalbxbx
1m1n_A_1631m1n   A168179KVKGAELSKTIVHHHHHHHT--EEaaaaaaalbxbb
1mh3_A_2321mh3   A232243WSNIDTSKVNYGHHHHHHHT--EEaaaaaaavpxbb
1o9j_A_2471o9j   A255266EAAAKSNLKRVTHHHHHHT--EEEaaaaaaalxxbb
1oas_A_711oas   A7788AYVAAARGYKLTHHHHHHHT--EEaaaaaaavbxbb
1ols_A_2581ols   A269280RRRAVAENQPFLHHHHHHHT--EEaaaaaaalbxbb
1ozh_A_2241ozh   A228239RRLLETSHIPVTHHHHHHH---EEaaaaaaalxpbb
1p1j_A_3031p1j   A306317VQLAEHEGTFIAHHHHHHHT--EEaaaaaaavbxbb
1pzx_A_651pzx   A7283FLPYAKENRPCLHHHHHHTT--EEaaaaaaalxwbb
1rif_A_681rif   A6980KKFCDNFGYKAWHHHHHHTT--EEaaaaaaalxbbb
1set_A_2881set   A303314EEILRLLELPYRHHHHHHTT--EEaaaaaaalbwbb
3mbp_*_2323mbp   -232243WSNIDTSKVNYGHHHHHHTT--EEaaaaaaaUxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1atg_*_121atg   *     EDO1,2-ETHANEDIOL Q - 17
1atg_*_121atg   *     EDO1,2-ETHANEDIOL S - 33
1atg_*_121atg   *     EDO1,2-ETHANEDIOL S - 34
1atg_*_121atg   *     WO4TUNGSTATE(VI)ION G - 35
1atg_*_121atg   *     EDO1,2-ETHANEDIOL G - 35
1byf_A_361byf   A     ZNZINC ION S - 36
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED S - 36
1byf_A_361byf   A     ZNZINC ION T - 37
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED T - 37
1byf_A_361byf   A     ZNZINC ION M - 38
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED M - 38
1byf_A_361byf   A     ZNZINC ION K - 49
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED K - 49
1byf_A_361byf   A     ZNZINC ION D - 52
1byf_A_361byf   A     ACTACETATE ION D - 52
1h5q_A_1221h5q   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 147
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 247
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 249
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 250
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 252
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 253
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 267
1o9j_A_2471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 268
1oas_A_711oas   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 71
1oas_A_711oas   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 72
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL S - 224
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL L - 227
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL R - 228
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL R - 229
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL L - 231
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL E - 232
1ozh_A_2241ozh   A     PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL H - 235
1rif_A_681rif   A     AUGOLD ION I - 68
1rif_A_681rif   A     AUGOLD ION K - 69
1rif_A_681rif   A     AUGOLD ION K - 70
1rif_A_681rif   A     AUGOLD ION F - 71
1rif_A_681rif   A     AUGOLD ION C - 72
1rif_A_681rif   A     AUGOLD ION D - 73
1rif_A_681rif   A     AUGOLD ION Y - 77
1rif_A_681rif   A     AUGOLD ION K - 78
1rif_A_681rif   A     AUGOLD ION A - 79
1rif_A_681rif   A     AUGOLD ION I - 81
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o9j_A_2471o9j   A NDANAD BINDING SITE FOR CHAIN AI - 253
1o9j_A_2471o9j   A NDANAD BINDING SITE FOR CHAIN AE - 268

Clusters included in this Subclass
CLUSTER: HE.3.51