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Information on SUBCLASS 3.8.2
Subclass Accession number: 5525
Subclass: 3.8.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 16.1 +/- 17.1
Average RMSD (Å) : 0.680 +/- 0.265

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XhXGpph
(φψ)-conformation: aapgpbb
Pattern: x[dehnrstw][CFILMV]x[adekqrs]x[ILTVY]x[DG]x[deksty][hilmv]x
Conservation:-0.603-0.9110.820-0.475-0.037-0.7640.470-0.7272.666-0.091-0.3060.805-0.848
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7q_A_1171c7q   A121133SHLLDVLEGKDLSHHHHHHHTT--EEaaaaaaaxvbxbb
1d2n_A_6961d2n   A700712TTIAQQVKGKKVWHHHHHHHTTSEEEaaaaaaapgxxbb
1df7_A_251df7   A2941AHFREITMGHTIVHHHHHHHTTSEEEaaaaaaapvbxbb
1ee8_A_31ee8   A1123RRLRPLVLGQTLRHHHHHHHTT-EEEaaaaaaapvxxxa
1ex2_A_861ex2   A90102ASMLRRLSGRSHSHHHHHHHTTSEEEaaaaaaaplbbbb
1fsg_A_491fsg   A6173YDIHRTYFGEELHHHHHHHHTTS-EEaaaaaaapvxxbb
1h32_A_1771h32   A178189ASCHEQYFDHYI.HHHHTTSTTSEE.aaaaaaapvxbb.
1h65_A_1081h65   A109120NIIKSFLLDKTI.HHHHHHTTT-EE.aaaaaaapvbbx.
1hjx_A_2961hjx   A297309YEICDFLRGATVHHHHHHHTTT-EEEaaaaaaaxvxbbb
1i8t_A_1941i8t   A196208KLIEKMLEGVDVKHHHHHHHTTSEEEaaaaaaapvbxbb
1j54_A_791j54   A8496DEFMDYIRGAELVHHHHHHHTTSEEEaaaaaaapvxxxb
1juv_A_341juv   A3850QNFKARTEGTIMIHHHHHHHTTSEEEaaaaaaapvbxxb
1l4u_A_861l4u   A8698PGVRAALAGHTVVHHHHHHHTTS-EEaaaaaaapgxxbx
1qzo_A_2751qzo   A276288YEICDFLHGATTHHHHHHHTTT-EEEaaaaaaaxvbbxb
1ra9_*_251ra9   -2941AWFKRNTLDKPVIHHHHHHHTTS-EEaaaaaaaplbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d2n_A_6961d2n   A     GOLGLYCEROL D - 696
1d2n_A_6961d2n   A     GOLGLYCEROL K - 697
1d2n_A_6961d2n   A     GOLGLYCEROL E - 698
1d2n_A_6961d2n   A     GOLGLYCEROL T - 700
1df7_A_251df7   A     MTXMETHOTREXATE P - 25
1df7_A_251df7   A     GOLGLYCEROL P - 25
1df7_A_251df7   A     MTXMETHOTREXATE E - 26
1df7_A_251df7   A     GOLGLYCEROL E - 26
1df7_A_251df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE D - 27
1df7_A_251df7   A     MTXMETHOTREXATE D - 27
1df7_A_251df7   A     GOLGLYCEROL D - 27
1df7_A_251df7   A     MTXMETHOTREXATE Q - 28
1df7_A_251df7   A     GOLGLYCEROL Q - 28
1df7_A_251df7   A     MTXMETHOTREXATE A - 29
1df7_A_251df7   A     GOLGLYCEROL A - 29
1df7_A_251df7   A     MTXMETHOTREXATE H - 30
1df7_A_251df7   A     GOLGLYCEROL H - 30
1df7_A_251df7   A     MTXMETHOTREXATE F - 31
1df7_A_251df7   A     MTXMETHOTREXATE R - 32
1df7_A_251df7   A     GOLGLYCEROL E - 33
1df7_A_251df7   A     MTXMETHOTREXATE T - 35
1df7_A_251df7   A     MTXMETHOTREXATE M - 36
1df7_A_251df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 42
1df7_A_251df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 43
1ex2_A_861ex2   A     PO4PHOSPHATE ION Q - 110
1fsg_A_491fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED I - 77
1fsg_A_491fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID I - 77
1fsg_A_491fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED L - 78
1fsg_A_491fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID L - 78
1h32_A_1771h32   A     HECHEME C C - 177
1h32_A_1771h32   A     HECHEME C A - 178
1h32_A_1771h32   A     HECHEME C S - 179
1h32_A_1771h32   A     EDO1,2-ETHANEDIOL C - 180
1h32_A_1771h32   A     HECHEME C C - 180
1h32_A_1771h32   A     CSSS-MERCAPTOCYSTEINE H - 181
1h32_A_1771h32   A     HECHEME C H - 181
1h32_A_1771h32   A     HECHEME C Y - 184
1h32_A_1771h32   A     EDO1,2-ETHANEDIOL I - 189
1h32_A_1771h32   A     HECHEME C I - 189
1h65_A_1081h65   A     MSESELENOMETHIONINE L - 108
1h65_A_1081h65   A     MSESELENOMETHIONINE N - 109
1h65_A_1081h65   A     MSESELENOMETHIONINE I - 110
1h65_A_1081h65   A     MSESELENOMETHIONINE I - 111
1h65_A_1081h65   A     MSESELENOMETHIONINE K - 112
1h65_A_1081h65   A     MSESELENOMETHIONINE S - 113
1h65_A_1081h65   A     MSESELENOMETHIONINE F - 114
1h65_A_1081h65   A     MSESELENOMETHIONINE L - 116
1h65_A_1081h65   A     MSESELENOMETHIONINE K - 118
1j54_A_791j54   A     EGLETHYLENE GLYCOL G - 92
1j54_A_791j54   A     EGLETHYLENE GLYCOL A - 93
1j54_A_791j54   A     MNMANGANESE (II) ION I - 97
1juv_A_341juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 40
1juv_A_341juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 51
1juv_A_341juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 52
1l4u_A_861l4u   A     ADPADENOSINE-5'-DIPHOSPHATE L - 100
1ra9_*_251ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 42
1ra9_*_251ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 43
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h32_A_1771h32   A HA2HEC BINDING SITE FOR CHAIN AC - 180
1h32_A_1771h32   A HA2HEC BINDING SITE FOR CHAIN AH - 181

Clusters included in this Subclass
CLUSTER: HE.3.75
CLUSTER: HE.4.146
CLUSTER: HE.4.196
CLUSTER: HE.5.156
CLUSTER: HE.5.205