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Information on SUBCLASS 3.9.1
Subclass Accession number: 242
Subclass: 3.9.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 53382 (>75 %)  53383 (>75 %)  
 Number of loops: 18

Average sequence ID (%) : 12.9 +/- 15.7
Average RMSD (Å) : 0.739 +/- 0.289

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXcXpXh
(φψ)-conformation: aalbabb
Pattern: xx[aeknrst]xx[aclmtv][dekrsty]xx[egkn]x[adekqst][agkrst][acfglv][afgiltv]
Conservation:-0.915-0.284-0.237-0.3510.0161.0020.878-1.033-0.5512.896-0.9170.387-0.544-0.066-0.280
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aho_*_191aho   -2135YCNEECTKLKGESGYHHHHHHHHTT-SEEEaaaaaaaaavxabbb
1b9h_A_391b9h   A4357FEREFAAHHGAAHALHHHHHHHHTT-SEEEaaaaaaaaalxabbb
1bs0_A_841bs0   A89103LEEELAEWLGYSRALHHHHHHHHHT-SEEEaaaaaaaaavbabbb
1cs1_A_521cs1   A5771VQRALAELEGGAGAVHHHHHHHHHT-SEEEaaaaaaaaavxabbb
1f1e_A_1021f1e   A122135KAAEYADEDGRKTV.HHHHHHHHTT-SEE.aaaaaaaaalbabx.
1fit_*_521fit   -6579VGTVVEKHFHGTSLTHHHHHHHHTT-SEEEaaaaaaaaalxabbb
1g2a_A_251g2a   A3347DMFETMYAEEGIGLAHHHHHHHHTT-SEEEaaaaaaaaalbabbb
1gc0_A_651gc0   A7084LEARMASLEGGEAGLHHHHHHHHHT-SEEEaaaaaaaaavbabbb
1gpj_A_291gpj   A2943AVRDIVESFGLSGSVHHHHHHHHHT-SEEEaaaaaaaaalxabbb
1ibj_A_1331ibj   A138152LESLLAKLDKADRAFHHHHHHHHHT-SEEEaaaaaaaaalbabbb
1izo_A_241izo   A2438FIKNRTERYNSDLFQHHHHHHHHTTSSEEEaaaaaaaaalbabbb
1j5v_A_2181j5v   A224238IAEEVTRKYNFKTVGHHHHHHHHH--SEEEaaaaaaaaalxabbb
1m6s_A_341m6s   A3953LERLAAETFGKEAALHHHHHHHHTT-SEEEaaaaaaaaavbabbb
1mdo_A_391mdo   A4458LEAAFCRLTGNQYAVHHHHHHHHH--SEEEaaaaaaaaavxabbb
1pvm_A_881pvm   A90104DVAAYLSENGLERCAHHHHHHHHHT-SEEEaaaaaaaaavbabbx
1qz5_A_1371qz5   A137151QAVLSLYASGRTTGIHHHHHHHHTT-SSEEaaaaaaaaavbabeb
1rl4_A_871rl4   A95109KMFDIMYESKGIGLSHHHHHHHHTT-SEEEaaaaaaaaalxabbb
2oat_A_1202oat   A123137YEEYITKLFNYHKVLHHHHHHHHHT-SEEEaaaaaaaaavbabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f1e_A_1021f1e   A     MSESELENOMETHIONINE D - 103
1f1e_A_1021f1e   A     MSESELENOMETHIONINE A - 104
1f1e_A_1021f1e   A     MSESELENOMETHIONINE Y - 108
1f1e_A_1021f1e   A     MSESELENOMETHIONINE L - 111
1f1e_A_1021f1e   A     MSESELENOMETHIONINE I - 112
1f1e_A_1021f1e   A     MSESELENOMETHIONINE C - 113
1f1e_A_1021f1e   A     MSESELENOMETHIONINE A - 115
1f1e_A_1021f1e   A     MSESELENOMETHIONINE T - 116
1f1e_A_1021f1e   A     MSESELENOMETHIONINE E - 118
1f1e_A_1021f1e   A     MSESELENOMETHIONINE L - 119
1fit_*_521fit   *     MSESELENOMETHIONINE L - 58
1fit_*_521fit   *     MSESELENOMETHIONINE F - 59
1fit_*_521fit   *     FRUFRUCTOSE K - 71
1fit_*_521fit   *     FRUFRUCTOSE H - 72
1fit_*_521fit   *     FRUFRUCTOSE F - 73
1fit_*_521fit   *     FRUFRUCTOSE H - 74
1fit_*_521fit   *     MSESELENOMETHIONINE F - 80
1g2a_A_251g2a   A     BB2ACTINONIN E - 41
1g2a_A_251g2a   A     BB2ACTINONIN E - 42
1g2a_A_251g2a   A     BB2ACTINONIN G - 43
1g2a_A_251g2a   A     BB2ACTINONIN I - 44
1g2a_A_251g2a   A     BB2ACTINONIN G - 45
1g2a_A_251g2a   A     BB2ACTINONIN L - 46
1g2a_A_251g2a   A     BB2ACTINONIN A - 47
1gpj_A_291gpj   A     GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL T - 47
1gpj_A_291gpj   A     GLUGLUTAMIC ACID T - 47
1j5v_A_2181j5v   A     MSESELENOMETHIONINE R - 218
1j5v_A_2181j5v   A     MSESELENOMETHIONINE Y - 221
1j5v_A_2181j5v   A     MSESELENOMETHIONINE A - 222
1j5v_A_2181j5v   A     MSESELENOMETHIONINE A - 225
1j5v_A_2181j5v   A     MSESELENOMETHIONINE Y - 232
1j5v_A_2181j5v   A     MSESELENOMETHIONINE F - 234
1j5v_A_2181j5v   A     MSESELENOMETHIONINE V - 237
1j5v_A_2181j5v   A     MSESELENOMETHIONINE G - 238
1j5v_A_2181j5v   A     MSESELENOMETHIONINE I - 239
1qz5_A_1371qz5   A     CACALCIUM ION Q - 137
1qz5_A_1371qz5   A     ATPADENOSINE-5'-TRIPHOSPHATE Q - 137
1qz5_A_1371qz5   A     KABKABIRAMIDE C V - 139
1qz5_A_1371qz5   A     KABKABIRAMIDE C L - 140
1qz5_A_1371qz5   A     KABKABIRAMIDE C L - 142
1qz5_A_1371qz5   A     KABKABIRAMIDE C Y - 143
1qz5_A_1371qz5   A     KABKABIRAMIDE C A - 144
1qz5_A_1371qz5   A     KABKABIRAMIDE C S - 145
1qz5_A_1371qz5   A     KABKABIRAMIDE C G - 146
1qz5_A_1371qz5   A     KABKABIRAMIDE C R - 147
1qz5_A_1371qz5   A     KABKABIRAMIDE C T - 148
1qz5_A_1371qz5   A     CACALCIUM ION D - 154
1qz5_A_1371qz5   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 154
1qz5_A_1371qz5   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 155
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID K - 104
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID G - 105
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID I - 106
1rl4_A_871rl4   A     BL52-{N'-[2-(5-AMINO-1-PHENYLCARBAMOYL-PENTYLCARBAMOYL)-HEXYL]-HYDRAZINOMETHYL}-HEXANOIC ACID(5-AMINO-1-PHENYLCARBAMOYL-PENTYL)-AMIDE I - 106
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID G - 107
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID L - 108
1rl4_A_871rl4   A     COCOBALT (II) ION S - 109
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID S - 109
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gpj_A_291gpj   A ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCINT - 47

Clusters included in this Subclass
CLUSTER: HE.3.34
CLUSTER: HE.4.15