Information on SUBCLASS 4.1.3 |
Subclass Accession number: 5589
Subclass: 4.1.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 22 Average sequence ID (%) : 13.9 +/- 15.8 Average RMSD (Å) : 0.786 +/- 0.301 Consensus geometry
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Consensus Sequence: | pXXXphXh |
(φψ)-conformation: | aabaapbb |
Pattern: | [adegknqrt] | x | x | [aeknqrst] | x | x | [enprs] | [degknqst] | [acfilpvwy] | x | [AFILPVY] | x | [cfglvy] |
Conservation: | -0.411 | -0.059 | -0.436 | 0.640 | -1.013 | -0.652 | 2.652 | 0.530 | -0.837 | -0.667 | 0.896 | 0.069 | -0.713 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1auo_A_31 | 1auo | A | 36 | 48 | ALQESLLTTRFVL | HHHTT-TTEEEEE | aaaaaxaabxbbx |
1b74_A_12 | 1b74 | A | 18 | 30 | AIRNRYRKVDIVY | HHHHHSSS-EEEE | aaaaabaapxbbb |
1cza_N_423 | 1cza | N | 430 | 442 | TLRRLVPDSDVRF | HHHHH-TTEEEEE | aaaaabaabbbbb |
1cza_N_871 | 1cza | N | 878 | 890 | TVKELSPKCNVSF | HHHHHSTTEEEEE | aaaaabaabbbbb |
1f89_A_25 | 1f89 | A | 38 | 50 | RAMKEQPDTKLVV | HHHHH-TTEEEEE | aaaaabaaxabbb |
1i0z_A_110 | 1i0z | A | 123 | 135 | QIVKYSPDCIIIV | HHHHH-TT-EEEE | aaaaabaaxbbbx |
1i7q_B_37 | 1i7q | B | 42 | 54 | ERLQHMEQPVLML | HHHHH-SSEEEEE | aaaaaxaapbxbb |
1itz_A_423 | 1itz | A | 432 | 444 | GIALHSPGFVPYC | HHHTT-TT-EEEE | aaaaabaaxbxbb |
1ixc_A_105 | 1ixc | A | 112 | 124 | AFLTSTPTATVSL | HHHHH-TTEEEEE | aaaaabaaxbbbb |
1jy1_A_232 | 1jy1 | A | 240 | 252 | AQAKPYENISLCQ | HHHTT-TTEEEEE | aaaaabaabbbbx |
1jys_A_155 | 1jys | A | 160 | 172 | KIRHNFPQAIAVE | HHHHH-TTEEEEE | aaaaabaaxabbb |
1lgy_A_110 | 1lgy | A | 129 | 141 | EQLTAHPTYKVIV | HHHHH-TT-EEEE | aaaaabaaxbbbb |
1lld_A_93 | 1lld | A | 110 | 122 | NLVKVAPNAIYML | HHHHH-TTSEEEE | aaaaabaaxxbbb |
1m6y_A_37 | 1m6y | A | 41 | 53 | AILEHCPGCRIIG | HHHHH-TT-EEEE | aaaaabaaxbbbb |
1mg5_A_43 | 1mg5 | A | 48 | 60 | ELKAINPKVTVTF | HHHHH-TTSEEEE | aaaaabaaxxbbb |
1ne9_A_31 | 1ne9 | A | 31 | 43 | GWAKVKNNWEPVD | HHHHHTTTSEEEE | aaaaaxaabxwbb |
1ogc_A_78 | 1ogc | A | 83 | 95 | FLENLFSEQEIEY | HHHHHTSSSEEEE | aaaaabaaxxbbb |
1tib_*_111 | 1tib | - | 130 | 142 | DAVREHPDYRVVF | HHHHH-TTSEEEE | aaaaabaaxxbbb |
1uwc_A_98 | 1uwc | A | 117 | 129 | QQASQYPDYALTV | HHHHHSTTSEEEE | aaaaabaaxxbbb |
1v4v_A_214 | 1v4v | A | 223 | 235 | RVAEAFPHLTFVY | HHHHH-TTSEEEE | aaaaabaabbxbb |
3tgl_*_109 | 3tgl | - | 128 | 140 | DQFKQYPSYKVAV | HHHHH-TTSEEEE | aaaaabaaxxbbb |
6ldh_*_106 | 6ldh | - | 123 | 135 | NIVKHSPDCIILV | HHHHH-TT-EEEE | aaaaabaaxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1uwc_A_98 | 1uwc | A | AC1NAG BINDING SITE FOR CHAIN A | G - 98 |
1uwc_A_98 | 1uwc | A | AC1NAG BINDING SITE FOR CHAIN A | I - 102 |
1uwc_A_98 | 1uwc | A | AC3NAG BINDING SITE FOR CHAIN B | I - 105 |
1uwc_A_98 | 1uwc | A | AC3NAG BINDING SITE FOR CHAIN B | D - 109 |
1uwc_A_98 | 1uwc | A | AC3NAG BINDING SITE FOR CHAIN B | Q - 110 |
Clusters included in this Subclass |
CLUSTER: HE.3.56 |
CLUSTER: HE.4.24 |
CLUSTER: HE.5.46 |