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Information on SUBCLASS 4.1.3
Subclass Accession number: 5589
Subclass: 4.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 13.9 +/- 15.8
Average RMSD (Å) : 0.786 +/- 0.301

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXXphXh
(φψ)-conformation: aabaapbb
Pattern: [adegknqrt]xx[aeknqrst]xx[enprs][degknqst][acfilpvwy]x[AFILPVY]x[cfglvy]
Conservation:-0.411-0.059-0.4360.640-1.013-0.6522.6520.530-0.837-0.6670.8960.069-0.713
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1auo_A_311auo   A3648ALQESLLTTRFVLHHHTT-TTEEEEEaaaaaxaabxbbx
1b74_A_121b74   A1830AIRNRYRKVDIVYHHHHHSSS-EEEEaaaaabaapxbbb
1cza_N_4231cza   N430442TLRRLVPDSDVRFHHHHH-TTEEEEEaaaaabaabbbbb
1cza_N_8711cza   N878890TVKELSPKCNVSFHHHHHSTTEEEEEaaaaabaabbbbb
1f89_A_251f89   A3850RAMKEQPDTKLVVHHHHH-TTEEEEEaaaaabaaxabbb
1i0z_A_1101i0z   A123135QIVKYSPDCIIIVHHHHH-TT-EEEEaaaaabaaxbbbx
1i7q_B_371i7q   B4254ERLQHMEQPVLMLHHHHH-SSEEEEEaaaaaxaapbxbb
1itz_A_4231itz   A432444GIALHSPGFVPYCHHHTT-TT-EEEEaaaaabaaxbxbb
1ixc_A_1051ixc   A112124AFLTSTPTATVSLHHHHH-TTEEEEEaaaaabaaxbbbb
1jy1_A_2321jy1   A240252AQAKPYENISLCQHHHTT-TTEEEEEaaaaabaabbbbx
1jys_A_1551jys   A160172KIRHNFPQAIAVEHHHHH-TTEEEEEaaaaabaaxabbb
1lgy_A_1101lgy   A129141EQLTAHPTYKVIVHHHHH-TT-EEEEaaaaabaaxbbbb
1lld_A_931lld   A110122NLVKVAPNAIYMLHHHHH-TTSEEEEaaaaabaaxxbbb
1m6y_A_371m6y   A4153AILEHCPGCRIIGHHHHH-TT-EEEEaaaaabaaxbbbb
1mg5_A_431mg5   A4860ELKAINPKVTVTFHHHHH-TTSEEEEaaaaabaaxxbbb
1ne9_A_311ne9   A3143GWAKVKNNWEPVDHHHHHTTTSEEEEaaaaaxaabxwbb
1ogc_A_781ogc   A8395FLENLFSEQEIEYHHHHHTSSSEEEEaaaaabaaxxbbb
1tib_*_1111tib   -130142DAVREHPDYRVVFHHHHH-TTSEEEEaaaaabaaxxbbb
1uwc_A_981uwc   A117129QQASQYPDYALTVHHHHHSTTSEEEEaaaaabaaxxbbb
1v4v_A_2141v4v   A223235RVAEAFPHLTFVYHHHHH-TTSEEEEaaaaabaabbxbb
3tgl_*_1093tgl   -128140DQFKQYPSYKVAVHHHHH-TTSEEEEaaaaabaaxxbbb
6ldh_*_1066ldh   -123135NIVKHSPDCIILVHHHHH-TT-EEEEaaaaabaaxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b74_A_121b74   A     DGND-GLUTAMINE G - 12
1b74_A_121b74   A     DGND-GLUTAMINE T - 14
1b74_A_121b74   A     DGND-GLUTAMINE V - 15
1cza_N_4231cza   N     ADPADENOSINE-5'-DIPHOSPHATE R - 425
1cza_N_4231cza   N     ADPADENOSINE-5'-DIPHOSPHATE R - 426
1cza_N_4231cza   N     ADPADENOSINE-5'-DIPHOSPHATE K - 429
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 113
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 116
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE I - 120
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 135
1itz_A_4231itz   A     TPPTHIAMINE DIPHOSPHATE E - 423
1itz_A_4231itz   A     TPPTHIAMINE DIPHOSPHATE T - 446
1itz_A_4231itz   A     TPPTHIAMINE DIPHOSPHATE F - 447
1ixc_A_1051ixc   A     MSESELENOMETHIONINE T - 125
1jys_A_1551jys   A     ADEADENINE V - 171
1jys_A_1551jys   A     ADEADENINE E - 172
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 103
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 106
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 107
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE G - 37
1m6y_A_371m6y   A     MSESELENOMETHIONINE H - 38
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 38
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 39
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 54
1m6y_A_371m6y   A     MSESELENOMETHIONINE D - 55
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 55
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 98
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 99
1uwc_A_981uwc   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID Y - 100
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 101
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE I - 102
1uwc_A_981uwc   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID H - 132
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 214
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 217
1v4v_A_2141v4v   A     MSESELENOMETHIONINE A - 218
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 221
1v4v_A_2141v4v   A     MSESELENOMETHIONINE Y - 235
1v4v_A_2141v4v   A     MSESELENOMETHIONINE P - 236
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uwc_A_981uwc   A AC1NAG BINDING SITE FOR CHAIN AG - 98
1uwc_A_981uwc   A AC1NAG BINDING SITE FOR CHAIN AI - 102
1uwc_A_981uwc   A AC3NAG BINDING SITE FOR CHAIN BI - 105
1uwc_A_981uwc   A AC3NAG BINDING SITE FOR CHAIN BD - 109
1uwc_A_981uwc   A AC3NAG BINDING SITE FOR CHAIN BQ - 110

Clusters included in this Subclass
CLUSTER: HE.3.56
CLUSTER: HE.4.24
CLUSTER: HE.5.46