Information on SUBCLASS 4.1.5 |
Subclass Accession number: 5591
Subclass: 4.1.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 14.0 +/- 15.7 Average RMSD (Å) : 0.625 +/- 0.296 Consensus geometry
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Consensus Sequence: | pXhPpXXX |
(φψ)-conformation: | aabaapbb |
Pattern: | x | [adekrt] | x | x | x | [PT] | [dehnt] | x | x | x | x |
Conservation: | -0.245 | -0.317 | -0.680 | -0.735 | 0.118 | 2.866 | 0.140 | -0.190 | -0.452 | -0.585 | 0.079 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1abr_A_94 | 1abr | A | 95 | 105 | SDYLFTGTDQH | HHHSSTTSEEE | aaaabaabxxb |
1ex2_A_42 | 1ex2 | A | 57 | 67 | VADLHPHAIVI | HHHH-TTSEEE | aaaabaaxbbb |
1jw9_B_86 | 1jw9 | B | 94 | 104 | LTRINPHIAIT | HHHH-TTSEEE | aaaabaabbbb |
1kyz_A_213 | 1kyz | A | 218 | 228 | IVSKYPTIKGI | HHHH-TTSEEE | aaaabaaxxxb |
1o20_A_290 | 1o20 | A | 292 | 301 | TREIVPDVVP. | HHHHSTTSEE. | aaaabaaxpx. |
1pjr_*_270 | 1pjr | - | 270 | 280 | FERDYPNAKVI | HHHHSTT-EEE | aaaabaapxbb |
1pox_A_425 | 1pox | A | 432 | 442 | AKLNYPERQVF | HHHH-TTS-EE | aaaabaabxbb |
1zpd_A_418 | 1zpd | A | 425 | 435 | YAVGAPERRNI | HHHH-TTSEEE | aaaabaaxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ex2_A_42 | 1ex2 | A | PO4PHOSPHATE ION | K - 51 |
1ex2_A_42 | 1ex2 | A | PO4PHOSPHATE ION | K - 53 |
1ex2_A_42 | 1ex2 | A | PO4PHOSPHATE ION | K - 55 |
1ex2_A_42 | 1ex2 | A | SUCSUCROSE | L - 60 |
1ex2_A_42 | 1ex2 | A | PO4PHOSPHATE ION | G - 68 |
1ex2_A_42 | 1ex2 | A | PO4PHOSPHATE ION | A - 69 |
1ex2_A_42 | 1ex2 | A | PO4PHOSPHATE ION | D - 70 |
1kyz_A_213 | 1kyz | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | V - 214 |
1kyz_A_213 | 1kyz | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | F - 230 |
1kyz_A_213 | 1kyz | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | D - 231 |
1pox_A_425 | 1pox | A | TPPTHIAMINE DIPHOSPHATE | A - 445 |
1pox_A_425 | 1pox | A | MGMAGNESIUM ION | G - 446 |
1pox_A_425 | 1pox | A | TPPTHIAMINE DIPHOSPHATE | G - 446 |
1zpd_A_418 | 1zpd | A | DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER | V - 438 |
1zpd_A_418 | 1zpd | A | DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER | G - 439 |
1zpd_A_418 | 1zpd | A | MGMAGNESIUM ION | G - 439 |
Clusters included in this Subclass |
CLUSTER: HE.3.214 |
CLUSTER: HE.4.162 |
CLUSTER: HE.5.308 |