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Information on SUBCLASS 4.2.2
Subclass Accession number: 5598
Subclass: 4.2.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 36

Average sequence ID (%) : 16.7 +/- 18.5
Average RMSD (Å) : 0.708 +/- 0.146

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpcXhpXX
(φψ)-conformation: aalababb
Pattern: [adegkqrst][ailmpy][aciklmv]x[aegknqrs][degknqrs]x[acfgilmvy][adeknqrst]x[gilmtv][afiltv]
Conservation:-0.403-0.2730.225-0.737-0.2212.173-1.259-0.3470.063-1.0950.3321.543
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5z_*_311a5z   -3950ALLMKGFAREMVHHHHHT--SEEEaaaaavaxabbx
1a9x_A_10011a9x   A10031014DRIKNGEYTYIIHHHHHT--SEEEaaaaavababbb
1cdo_A_3551cdo   A360371DLMKHGKCIRTVHHHHTT--SEEEaaaaalababbb
1cfy_A_101cfy   A1829DLKLGKKYKFILHHHHH---SEEEaaaaalababbb
1chd_*_3141chd   -317328EAINMGGVSEVVHHHHTT--SEEEaaaaavababbb
1cnu_A_71cnu   A1526ELKLGHQHRYVTHHHHH---SEEEaaaaalababbb
1cp2_A_1341cp2   A134145MPIREGKAQEIYHHHHTTS--EEEaaaaavababbb
1dci_A_2331dci   A235246EALDSGLVSRVFHHHHHTSSSEEEaaaaavababbb
1dhs_*_1121dhs   -118129YLVQHNMVDVLVHHHHTT--SEEEaaaaalababbb
1ey3_A_2001ey3   A202213DAKQAGLVSKIFHHHHHTS-SEEEaaaaavababbb
1f7s_A_121f7s   A2031ELKAKRTHRFIVHHHHH---SEEEaaaaalababbb
1gca_*_2391gca   -243254ALVKSGAMAGTVHHHHHTSS-BEEaaaaavababbb
1gv0_A_101gv0   A1829RLAEKQLARELVHHHHHT--SEEEaaaaalababbb
1gv1_A_101gv1   A1829RIADKKLARELVHHHHTT--SEEEaaaaalababbb
1gvh_A_3291gvh   A330340ADRAKGQFDSE.HHHHHT--SEE.aaaaalababb.
1h7m_A_201h7m   A2536QYAKMGGAKLIIHHHHTT--SEEEaaaaavababbb
1hnu_A_1861hnu   A188198IMCENGFISKN.HHHHTT--SEE.aaaaavaxabx.
1hyh_A_311hyh   A3950GLIAQGVADDYVHHHHHT--SEEEaaaaavababbb
1hzd_A_2451hzd   A247258EAKAVGLISHVLHHHHHTS-SEEEaaaaavababbb
1i0z_A_301i0z   A3849SILGKSLADELAHHHHTT--SEEEaaaaalababbb
1i10_A_291i10   A3748SILMKDLADELAHHHHTT--SEEEaaaaalababbb
1jj2_F_331jj2   F3849KSIERGSAELVFHHHHHT--SEEEaaaaavaxabbb
1ldn_A_301ldn   A3849ALMNQGIADEIVHHHHHT--SEEEaaaaavababbb
1lld_A_171lld   A2536AAAQRGIAREIVHHHHTT--SEEEaaaaalababbb
1o8u_A_1811o8u   A183194TALDYGAVNEVLHHHHHTS-SEEEaaaaavababbb
1o98_A_3761o98   A385396KEIEADKYDAIIHHHHTT--SEEEaaaaalababbb
1on3_A_2251on3   A228239HMAISGNIHFVAHHHTT---SEEEaaaaavababbb
1p0c_A_13531p0c   A13581369ELLSSGQGVRSIHHHHTT-SSEEEaaaaalababbb
1pxw_A_411pxw   A4657KAVERGQAKLVIHHHHTT--SEEEaaaaavaxabbb
1q35_A_1781q35   A183194KAIKEGICDYSIHHHHHTS-SEEEaaaaavababbb
1uyr_A_21001uyr   A21022113RMVAKGVISKELHHHHHT-SSEEEaaaaavababxb
2gbp_*_2392gbp   -243254ALVKSGALAGTVHHHHHTSSSBEEaaaaavababbb
2ts1_*_22ts1   -616ELQWRGLVNQT.HHHHHT--SEE.aaaaavababb.
3pmg_A_2693pmg   A273284ETMKSGEHDFGAHHHHTS--SEEEaaaaavaxabbb
6ldh_*_306ldh   -3849SILMKDLADEVAHHHTTT--SEEEaaaaalababbb
9ldt_A_319ldt   A3950SILMKELADEIAHHHHTT--SEEEaaaaalababbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a5z_*_311a5z   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 31
1a5z_*_311a5z   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 32
1a5z_*_311a5z   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 33
1a5z_*_311a5z   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 52
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 362
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 365
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE C - 367
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 368
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 369
1cdo_A_3551cdo   A     ZNZINC ION R - 369
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED L - 237
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED D - 238
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED S - 239
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED G - 240
1dhs_*_1121dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 130
1gv0_A_101gv0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 10
1gv0_A_101gv0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 11
1gv0_A_101gv0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 12
1gv0_A_101gv0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 31
1hyh_A_311hyh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 31
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Q - 30
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 31
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 32
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 51
1i10_A_291i10   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE A - 29
1i10_A_291i10   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 30
1i10_A_291i10   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 31
1i10_A_291i10   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 50
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 30
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 31
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 32
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 51
1lld_A_171lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 17
1lld_A_171lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 18
1lld_A_171lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 19
1lld_A_171lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 38
1o98_A_3761o98   A     MNMANGANESE (II) ION N - 398
1p0c_A_13531p0c   A     PO4PHOSPHATE ION L - 1360
1p0c_A_13531p0c   A     CRYPROPANE-1,2,3-TRIOL G - 1363
1p0c_A_13531p0c   A     PO4PHOSPHATE ION V - 1366
1p0c_A_13531p0c   A     ZNZINC ION R - 1367
1p0c_A_13531p0c   A     PO4PHOSPHATE ION R - 1367
1q35_A_1781q35   A     FMTFORMIC ACID D - 178
1q35_A_1781q35   A     FMTFORMIC ACID R - 179
1q35_A_1781q35   A     FMTFORMIC ACID D - 180
1q35_A_1781q35   A     FMTFORMIC ACID N - 196
9ldt_A_319ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 31
9ldt_A_319ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 52
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gv0_A_101gv0   A NAANAD BINDING SITE FOR CHAIN AN - 10

Clusters included in this Subclass
CLUSTER: HE.3.77
CLUSTER: HE.4.128
CLUSTER: HE.4.248
CLUSTER: HE.4.44
CLUSTER: HE.5.194
CLUSTER: HE.5.21
CLUSTER: HE.5.286
CLUSTER: HE.6.235
CLUSTER: HE.6.33