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Information on SUBCLASS 4.2.3
Subclass Accession number: 5599
Subclass: 4.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 26.3 +/- 26.4
Average RMSD (Å) : 0.455 +/- 0.222

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXGXhXhh
(φψ)-conformation: aalababb
Pattern: [anpqs]x[adknqrs]x[afiltv][aegknqr][adenqrs][dgn]x[afgilv][cdgnps][almv][agmvy]
Conservation:-0.248-0.959-0.480-0.3540.125-0.627-0.2283.045-0.756-0.2420.4880.247-0.009
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a99_A_2291a99   A229241YINDLANGDICVAHHHHHHTTS-SEEaaaaaaavababb
1amf_*_1521amf   -155167ALALVERNEAPLGHHHHHHTTSSSEEaaaaaaalababb
1atg_*_1471atg   -150162AHSQTASGAADLGHHHHHHTTSSSEEaaaaaaavababb
1cb6_A_15271cb6   A15311543AFRCLAENAGDVAHHHHHHTTS-SEEaaaaaaavababb
1ce2_A_1921ce2   A195207AFKCLQDGAGDVAHHHHHHTTS-SEEaaaaaaavababb
1ce2_A_5251ce2   A529541AFRCLAEDVGDVAHHHHHHTTSSSEEaaaaaaavababb
1ef8_A_1691ef8   A169181AQRALAVGILNHVHHHHHHTTS-SEEaaaaaaagaxabb
1elj_A_2101elj   A213225QQSIFLEGRAPMMHHHHHHTTSSSEEaaaaaaavababb
1h45_A_1911h45   A195207AFKCLRDGAGDVAHHHHHHTTS-SEEaaaaaaavababb
1h76_A_1911h76   A195207AFNCLKEDAGDVAHHHHHHTTS-SEEaaaaaaavababb
1iej_A_1901iej   A194206AFHCLKDGKGDVAHHHHHHTTS-SEEaaaaaaavababb
1jet_A_3971jet   A400412FLDTRHQGTFDVAHHHHHHHT--SEEaaaaaaavababb
1m22_A_2041m22   A206218SAVAVAANLASVAHHHHHHTTSSSEEaaaaaaalababb
1nkx_A_5251nkx   A529541AFRCLAEDVGDVAHHHHHHTTS-SEEaaaaaaalababb
1nnf_A_1751nnf   A178190ALQAVENGEVPAAHHHHHHTTS-SEEaaaaaaavababb
1o7t_A_1751o7t   A178190ALQAVENGEVDAAHHHHHHHTSSSEEaaaaaaavababb
1o9p_A_1331o9p   A135147SAAAVGAGMIPLAHHHHHHTTS-SEEaaaaaaavababb
1on3_A_4781on3   A478490PYVAAARGQVDDVHHHHHHTTSSSEEaaaaaaavababb
1p99_A_781p99   A7890PNKALNDGDIDMNHHHHHHTTSSSEEaaaaaaavababb
1ryo_A_1871ryo   A191203AFKCLKDGAGDVAHHHHHHTTS-SEEaaaaaaavababb
1urs_A_2351urs   A238250AKAEFLAGKIGMYHHHHHHTT--SEEaaaaaaavababb
1us5_A_601us5   A6375NINAINAGEFEMAHHHHHHTTS-SEEaaaaaaavababb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a99_A_2291a99   A     PUT1,4-DIAMINOBUTANE I - 230
1a99_A_2291a99   A     PUT1,4-DIAMINOBUTANE W - 244
1amf_*_1521amf   *     MOOMOLYBDATE ION V - 152
1amf_*_1521amf   *     MOOMOLYBDATE ION R - 153
1amf_*_1521amf   *     MOOMOLYBDATE ION G - 154
1amf_*_1521amf   *     MOOMOLYBDATE ION Y - 170
1atg_*_1471atg   *     WO4TUNGSTATE(VI)ION V - 147
1atg_*_1471atg   *     WO4TUNGSTATE(VI)ION G - 148
1atg_*_1471atg   *     ACTACETATE ION G - 157
1atg_*_1471atg   *     ACTACETATE ION A - 158
1atg_*_1471atg   *     ACTACETATE ION A - 159
1atg_*_1471atg   *     ACTACETATE ION D - 160
1atg_*_1471atg   *     ACTACETATE ION L - 161
1ce2_A_1921ce2   A     FEFE (III) ION Y - 192
1ce2_A_1921ce2   A     CO3CARBONATE ION Y - 192
1ce2_A_1921ce2   A     CO3CARBONATE ION F - 208
1ce2_A_1921ce2   A     CO3CARBONATE ION V - 209
1ce2_A_1921ce2   A     FEFE (III) ION K - 210
1ce2_A_1921ce2   A     CO3CARBONATE ION K - 210
1ce2_A_5251ce2   A     FEFE (III) ION Y - 526
1ce2_A_5251ce2   A     CO3CARBONATE ION Y - 526
1ce2_A_5251ce2   A     CO3CARBONATE ION F - 542
1ce2_A_5251ce2   A     CO3CARBONATE ION V - 543
1ce2_A_5251ce2   A     FEFE (III) ION K - 544
1elj_A_2101elj   A     GLCGLUCOSE Y - 210
1h45_A_1911h45   A     CO3CARBONATE ION S - 191
1h45_A_1911h45   A     CO3CARBONATE ION I - 209
1h45_A_1911h45   A     CO3CARBONATE ION G - 210
1iej_A_1901iej   A     FEFE (III) ION Y - 191
1iej_A_1901iej   A     CO3CARBONATE ION Y - 191
1iej_A_1901iej   A     CO3CARBONATE ION F - 207
1jet_A_3971jet   A     IUMURANYL (VI) ION D - 410
1nnf_A_1751nnf   A     FEFE (III) ION N - 175
1nnf_A_1751nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID N - 175
1nnf_A_1751nnf   A     FEFE (III) ION N - 193
1nnf_A_1751nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID N - 193
1o7t_A_1751o7t   A     HF5HF OXO CLUSTER HF5 N - 175
1o7t_A_1751o7t   A     HF5HF OXO CLUSTER HF5 S - 176
1o7t_A_1751o7t   A     HF5HF OXO CLUSTER HF5 N - 193
1o9p_A_1331o9p   A     MLAMALONIC ACID T - 150
1o9p_A_1331o9p   A     MLAMALONIC ACID Q - 151
1p99_A_781p99   A     GLYGLYCINE F - 92
1p99_A_781p99   A     METMETHIONINE F - 92
1p99_A_781p99   A     METMETHIONINE Q - 93
1p99_A_781p99   A     METMETHIONINE H - 94
1ryo_A_1871ryo   A     OXLOXALATE ION G - 187
1ryo_A_1871ryo   A     OXLOXALATE ION Y - 188
1ryo_A_1871ryo   A     FEFE (III) ION Y - 188
1ryo_A_1871ryo   A     OXLOXALATE ION F - 204
1ryo_A_1871ryo   A     OXLOXALATE ION V - 205
1us5_A_601us5   A     GLUGLUTAMIC ACID S - 60
1us5_A_601us5   A     GLUGLUTAMIC ACID V - 61
1us5_A_601us5   A     GLUGLUTAMIC ACID A - 77
1us5_A_601us5   A     GLUGLUTAMIC ACID Q - 78
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_1521amf   * MO4MOLYBDATE BINDING SITE.V - 152
1amf_*_1521amf   * MO4MOLYBDATE BINDING SITE.Y - 170
1atg_*_1471atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.V - 147
1cb6_A_15271cb6   A CLACHLORIDE ION LOCATED NEAR CARBONATE SITE IN CLOSED C LOBE, FORMING HYDROGEN BONDS WITH THR461_OG1, ARG465_NE, ARG465_NH2, GLY468_N AND TYR528_OHY - 1528
1ce2_A_1921ce2   A FE1IRON BINDING SITE IN N-LOBE.Y - 192
1ce2_A_5251ce2   A FE2IRON BINDING SITE IN C-LOBE.Y - 526
1o7t_A_1751o7t   A HF1HF5 BINDING SITE FOR CHAIN AN - 175
1o7t_A_1751o7t   A HF1HF5 BINDING SITE FOR CHAIN AN - 193
1us5_A_601us5   A AC2GLU BINDING SITE FOR CHAIN AS - 60

Clusters included in this Subclass
CLUSTER: HE.4.72
CLUSTER: HE.5.24
CLUSTER: HE.6.11