ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.2.4

Subclass Accession number: 5600
Subclass: 4.2.4

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 30.3 +/- 30.2
Average RMSD (Å) : 0.525 +/- 0.317

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	Xpcphphh
(φψ)-conformation:	aalababb

Pattern:	[acik]	[ilv]	[adekqr]	[akl]	[FIV]	[aklmt]	[adeknrs]	[GKN]	[AEKQR]	[almt]	[ADERT]	[aeg]	[FIMTV]	[aimtv]	[gl]
Conservation:	0.050	0.085	-1.047	-0.518	2.180	-1.008	-0.915	1.747	1.053	-0.563	-0.096	-0.929	0.654	-0.317	-0.376

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a9x_A_1001	1a9x	A	1001	1015	IQDRIKNGEYTYIIN	HHHHHHHT--SEEEE	aaaaaaavababbbb
1cb6_A_1377	1cb6	A	1380	1394	CIALVLKGEADAMSL	HHHHHHHTS--BEEE	aaaaaaavababbxb
1ce2_A_42	1ce2	A	45	59	CIRAITEKKADAVTL	HHHHHHTTS--BEEE	aaaaaaalababbxb
1gca_*_239	1gca	-	241	255	ALALVKSGAMAGTVL	HHHHHHHTSS-BEEE	aaaaaaavababbbx
1h45_A_42	1h45	A	45	59	CIQAIAENRADAVTL	HHHHHHTTS--BEEE	aaaaaaalababbxb
1h76_A_44	1h76	A	47	61	CIKAIRDKEADAVTL	HHHHHHTTS--BEEE	aaaaaaavababbxb
1iej_A_42	1iej	A	45	59	CIKAIANNEADAITL	HHHHHHTTS--BEEE	aaaaaaavababbxb
1iq7_A_377	1iq7	A	380	394	CIIKIMKGEADAVAL	HHHHHHTTS--BEEE	aaaaaaaUababbxb
1n62_B_456	1n62	B	466	480	KQEAFKRGETREIMG	HHHHHHTTS-SEEEE	aaaaaaavabaxbbb
1ryo_A_45	1ryo	A	48	62	CIRAIAANEADAVTL	HHHHHHTTS--BEEE	aaaaaaavababbxb
1t2a_A_219	1t2a	A	226	240	SVAKIYLGQLECFSL	HHHHHHHTS-S-EEE	aaaaaaavababbbb
2gbp_*_239	2gbp	-	241	255	ALALVKSGALAGTVL	HHHHHHHTSSSBEEE	aaaaaaavababbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1t2a_A_219	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	V - 219
1t2a_A_219	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 220
1t2a_A_219	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	K - 222
1t2a_A_219	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	S - 239
1t2a_A_219	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	L - 240

Clusters included in this Subclass

CLUSTER: HE.5.82

CLUSTER: HE.6.26