Logo
Information on SUBCLASS 4.2.6
Subclass Accession number: 5602
Subclass: 4.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.9 +/- 13.3
Average RMSD (Å) : 0.667 +/- 0.153

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpGXXpXh
(φψ)-conformation: aalababb
Pattern: [AGM][CFM][AKR][NRT][G]x[ILT][KR]x[ILP][AMY][GI]
Conservation:-0.556-0.071-0.071-0.0712.701-0.625-0.1401.228-0.694-0.556-0.487-0.659
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1li4_A_1581li4   A167178MMANGILKVPAIHHHTT---SEEEaaaavapabxbb
1n62_B_4561n62   B469480AFKRGETREIMGHHHTTS-SEEEEaaaavabaxbbb
1oyw_A_1101oyw   A110121GCRTGQIRLLYIHHHHT--SEEEEaaaavababbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 158
1li4_A_1581li4   A     NOC3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1, 2-DIOL T - 158
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 159
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 160
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 162
1oyw_A_1101oyw   A     MSESELENOMETHIONINE G - 110
1oyw_A_1101oyw   A     MSESELENOMETHIONINE C - 111
1oyw_A_1101oyw   A     MSESELENOMETHIONINE R - 112
1oyw_A_1101oyw   A     MSESELENOMETHIONINE T - 113
1oyw_A_1101oyw   A     MSESELENOMETHIONINE G - 114
1oyw_A_1101oyw   A     MSESELENOMETHIONINE Q - 115
1oyw_A_1101oyw   A     MSESELENOMETHIONINE I - 116
1oyw_A_1101oyw   A     MSESELENOMETHIONINE Y - 120
1oyw_A_1101oyw   A     MSESELENOMETHIONINE I - 121

Clusters included in this Subclass
CLUSTER: HE.5.284