Logo
Information on SUBCLASS 4.20.1
Subclass Accession number: 5665
Subclass: 4.20.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 13.8 +/- 14.9
Average RMSD (Å) : 0.827 +/- 0.443

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXcXpX
(φψ)-conformation: aabpgpbb
Pattern: x[AILV][efhkry]x[fiklv]xx[aekl]x[kprs][DGN]x[aeknst][ailtv]x
Conservation:-0.1691.191-0.397-0.561-0.631-0.502-0.971-0.562-0.7930.7812.834-0.0770.0070.588-0.738
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amx_*_2391amx   -239253AITDFEKAFPGSKITHHHHHHHHSTT-EEEaaaaaaaabpgxbbb
1ei1_A_1841ei1   A190204RLRELSFLDSGVSIRHHHHHHHHSTT-EEEaaaaaaaabxvbxbb
1g66_A_231g66   A2539VVNGVLSAYPGSTAEHHHHHHHHSTT-EEEaaaaaaaabpvxbbb
1gde_A_141gde   A1730KLFDIAAGMKDVIS.HHHHHHHH-TT-EE.aaaaaaaaxxvxxx.
1kij_A_1841kij   A190204RLREVAYLVAGLKLVHHHHHHHHTTT-EEEaaaaaaaabpgxbbb
1l8a_A_3661l8a   A371385AAFKKAQETKGKATVHHHHHHHH--SS-EEaaaaaaaaxbvbxbb
1mtz_A_2481mtz   A250264VARVIHEKIAGSELHHHHHHHHHSTT-EEEaaaaaaaaxpvxbbb
1od6_A_961od6   A102116MAHLNRQLYPGLETLHHHHHHHHTTT-EEEaaaaaaaabpvxxbb
1p9l_A_811p9l   A86100QVESWLVAKPNTSVLHHHHHHHTSTT-EEEaaaaaaaabxvbbbb
1pvg_A_2211pvg   A222236RVYDINGSVRDINVYHHHHHHHHSTT-EEEaaaaaaaaxxvbbbb
1s14_A_11811s14   A11871201VLKAKAVLCPGVEITHHHHHHHHSTT-EEEaaaaaaaabpgxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gde_A_141gde   A     GLUGLUTAMIC ACID I - 15
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE Y - 98
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE E - 99
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE Q - 101
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE M - 102
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE A - 103
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE L - 105
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE N - 106
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE L - 109
1pvg_A_2211pvg   A     MSESELENOMETHIONINE R - 221
1pvg_A_2211pvg   A     MSESELENOMETHIONINE R - 222
1pvg_A_2211pvg   A     MSESELENOMETHIONINE V - 223
1pvg_A_2211pvg   A     MSESELENOMETHIONINE Y - 224
1pvg_A_2211pvg   A     MSESELENOMETHIONINE D - 225
1pvg_A_2211pvg   A     MSESELENOMETHIONINE R - 231
1pvg_A_2211pvg   A     MSESELENOMETHIONINE D - 232
1pvg_A_2211pvg   A     MSESELENOMETHIONINE I - 233
1pvg_A_2211pvg   A     MSESELENOMETHIONINE L - 237
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od6_A_961od6   A AC2SO4 BINDING SITE FOR CHAIN AH - 104
1od6_A_961od6   A AC2SO4 BINDING SITE FOR CHAIN AR - 107
1od6_A_961od6   A AC2SO4 BINDING SITE FOR CHAIN AQ - 108
1od6_A_961od6   A AC4SO4 BINDING SITE FOR CHAIN AY - 110

Clusters included in this Subclass
CLUSTER: HE.4.74