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Information on SUBCLASS 4.3.3
Subclass Accession number: 5606
Subclass: 4.3.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 11.0 +/- 11.8
Average RMSD (Å) : 1.037 +/- 0.256

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXpXXXX
(φψ)-conformation: aapabpbb
Pattern: [IKLM][dehnpq][ADENQT][aglvy]x[AEKM][ADEKNST]x[ADKQST]x[EPR]x[iklmtv][filv]
Conservation:1.499-0.3350.065-1.256-0.4870.7370.167-1.0750.094-0.7852.360-0.735-0.5290.283
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dqn_A_381dqn   A5265MNEYYKDVAEPVTLHHHHHTT-SS-EEEaaaaaaapabpxxx
1f6y_A_791f6y   A8295IEAGLKKCKNRAMIHHHHHHH-SS-EEEaaaaaaaxabpbbb
1gs5_A_171gs5   A2740LVNYRESHQRPLVIHHHHHTT--S-EEEaaaaaaabaxxxbb
1gz0_A_851gz0   A8598LPDLIASLDQPFLLHHHHHHT-SS-EEEaaaaaaababpbbb
1k68_A_201k68   A2639IQEALANSTVPHEVHHHHHHT-SS--EEaaaaaaaxabwbbb
1oth_A_1451oth   A148161LDTLAKEASIPIINHHHHHHH-SS-EEEaaaaaaaxabpbbx
1qi9_A_4881qi9   A506519LHQELMTFAEESTFHHHHHHH-SS--EEaaaaaaaxaxxbbb
1s4n_A_1661s4n   A169182KEAVTKAVSSEVKFHHHHHHH-SS-EEEaaaaaaaxabxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dqn_A_381dqn   A     MGMAGNESIUM ION L - 68
1dqn_A_381dqn   A     POPPYROPHOSPHATE 2- L - 68
1gs5_A_171gs5   A     NLGN-ACETYL-L-GLUTAMATE H - 42
1gs5_A_171gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER H - 42
1gz0_A_851gz0   A     MSESELENOMETHIONINE L - 85
1gz0_A_851gz0   A     MSESELENOMETHIONINE P - 86
1gz0_A_851gz0   A     MSESELENOMETHIONINE I - 89
1gz0_A_851gz0   A     MSESELENOMETHIONINE F - 96
1gz0_A_851gz0   A     MSESELENOMETHIONINE L - 98
1gz0_A_851gz0   A     MSESELENOMETHIONINE I - 99
1k68_A_201k68   A     PHDASPARTYL PHOSPHATE D - 22

Clusters included in this Subclass
CLUSTER: HE.5.56