Information on SUBCLASS 4.3.3 |
Subclass Accession number: 5606
Subclass: 4.3.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 11.0 +/- 11.8 Average RMSD (Å) : 1.037 +/- 0.256 Consensus geometry
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Consensus Sequence: | XpXpXXXX |
(φψ)-conformation: | aapabpbb |
Pattern: | [IKLM] | [dehnpq] | [ADENQT] | [aglvy] | x | [AEKM] | [ADEKNST] | x | [ADKQST] | x | [EPR] | x | [iklmtv] | [filv] |
Conservation: | 1.499 | -0.335 | 0.065 | -1.256 | -0.487 | 0.737 | 0.167 | -1.075 | 0.094 | -0.785 | 2.360 | -0.735 | -0.529 | 0.283 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dqn_A_38 | 1dqn | A | 52 | 65 | MNEYYKDVAEPVTL | HHHHHTT-SS-EEE | aaaaaaapabpxxx |
1f6y_A_79 | 1f6y | A | 82 | 95 | IEAGLKKCKNRAMI | HHHHHHH-SS-EEE | aaaaaaaxabpbbb |
1gs5_A_17 | 1gs5 | A | 27 | 40 | LVNYRESHQRPLVI | HHHHHTT--S-EEE | aaaaaaabaxxxbb |
1gz0_A_85 | 1gz0 | A | 85 | 98 | LPDLIASLDQPFLL | HHHHHHT-SS-EEE | aaaaaaababpbbb |
1k68_A_20 | 1k68 | A | 26 | 39 | IQEALANSTVPHEV | HHHHHHT-SS--EE | aaaaaaaxabwbbb |
1oth_A_145 | 1oth | A | 148 | 161 | LDTLAKEASIPIIN | HHHHHHH-SS-EEE | aaaaaaaxabpbbx |
1qi9_A_488 | 1qi9 | A | 506 | 519 | LHQELMTFAEESTF | HHHHHHH-SS--EE | aaaaaaaxaxxbbb |
1s4n_A_166 | 1s4n | A | 169 | 182 | KEAVTKAVSSEVKF | HHHHHHH-SS-EEE | aaaaaaaxabxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dqn_A_38 | 1dqn | A | MGMAGNESIUM ION | L - 68 |
1dqn_A_38 | 1dqn | A | POPPYROPHOSPHATE 2- | L - 68 |
1gs5_A_17 | 1gs5 | A | NLGN-ACETYL-L-GLUTAMATE | H - 42 |
1gs5_A_17 | 1gs5 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | H - 42 |
1gz0_A_85 | 1gz0 | A | MSESELENOMETHIONINE | L - 85 |
1gz0_A_85 | 1gz0 | A | MSESELENOMETHIONINE | P - 86 |
1gz0_A_85 | 1gz0 | A | MSESELENOMETHIONINE | I - 89 |
1gz0_A_85 | 1gz0 | A | MSESELENOMETHIONINE | F - 96 |
1gz0_A_85 | 1gz0 | A | MSESELENOMETHIONINE | L - 98 |
1gz0_A_85 | 1gz0 | A | MSESELENOMETHIONINE | I - 99 |
1k68_A_20 | 1k68 | A | PHDASPARTYL PHOSPHATE | D - 22 |
Clusters included in this Subclass |
CLUSTER: HE.5.56 |