ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.31.1

Subclass Accession number: 8499
Subclass: 4.31.1

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 23.8 +/- 25.8
Average RMSD (Å) : 0.583 +/- 0.286

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hhchXNph
(φψ)-conformation:	aalbbabb

Pattern:	[EKPQT]	[adrs]	[ANT]	[akq]	[FKL]	[aivy]	[EGN]	[AEL]	[citv]	[n]	[TVY]	[ail]	[klmv]	x
Conservation:	0.161	-1.433	0.454	-0.151	0.045	-0.700	1.582	-0.092	-0.658	2.270	0.700	-0.874	-0.664	-0.639

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fi4_A_276	1fi4	A	287	300	TINQFYGETIVAYT	HHHHHHTS--EEEE	aaaaaavbxabbbb
1k46_A_70	1k46	A	78	91	QSTVKHNLNNYDLR	HHHHHTT---EEEE	aaaaaalbxabbbb
1npd_A_83	1npd	A	83	96	PAAKLVGAINTIVN	HHHHHHT--SEEEE	aaaaaavbbabbbb
1nvt_A_87	1nvt	A	87	100	KDAQLIGAVNTIKI	HHHHHHT---EEEE	aaaaaavbbabbbb
1nyt_A_77	1nyt	A	77	90	ERAALAGAVNTLMR	HHHHHHT--SEEEE	aaaaaavbbabbbx
1p77_A_77	1p77	A	77	90	QRAKLAEACNTLKK	HHHHHHT--SEEEE	aaaaaalbbabbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	D - 276
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	S - 278
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	K - 279
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	I - 282
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	C - 285
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	H - 286
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	N - 289
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	T - 295
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	V - 297
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	A - 298
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	Y - 299
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	T - 300
1fi4_A_276	1fi4	A	MSESELENOMETHIONINE	F - 301
1npd_A_83	1npd	A	MSESELENOMETHIONINE	I - 94
1npd_A_83	1npd	A	MSESELENOMETHIONINE	N - 96
1nyt_A_77	1nyt	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	N - 86
1nyt_A_77	1nyt	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	T - 87

Clusters included in this Subclass

CLUSTER: HE.4.121