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Information on SUBCLASS 4.4.1
Subclass Accession number: 5616
Subclass: 4.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 15.8 +/- 16.2
Average RMSD (Å) : 0.674 +/- 0.262

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXGXXpXh
(φψ)-conformation: aagababb
Pattern: x[adegqst]xx[adeknr]x[GR]xx[dehkpqst][adekrs][ailptv]x
Conservation:-0.309-0.295-0.491-0.240-0.119-0.5533.252-0.346-0.500-0.245-0.2610.295-0.187
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bam_*_1171bam   -128140LLGLKHGEIDLAIHHHHHTTS-SEEEaaaaaavababbb
1cdo_A_3551cdo   A359371IDLMKHGKCIRTVHHHHHTT--SEEEaaaaaalababbb
1czy_A_3611czy   A365377RQEAVAGRIPAIFHHHHHTTS---EEaaaaaavababbx
1db3_A_1961db3   A204216IANIAQGLESCLYHHHHHTTS---EEaaaaaavababbb
1ei1_A_341ei1   A4860IDEALAGHCKEIIHHHHHTT---EEEaaaaaavababbb
1ek6_A_2081ek6   A212224VSQVAIGRREALNHHHHHHTSSS-EEaaaaaavababxb
1f8f_A_3511f8f   A355367AIDSRKGITLKPIHHHHHHTS-SEEEaaaaaavababxb
1fs0_G_1471fs0   G157169LQAYDEGRLDKLYHHHHHTTS-S-EEaaaaaavababbb
1gvh_A_3291gvh   A329340EADRAKGQFDSE.HHHHHHT--SEE.aaaaaalababb.
1gvn_B_1751gvn   B190202ETLHKTGLFSDIRHHHHHHT--S-EEaaaaaavaxabbb
1kij_A_321kij   A4759VDEALAGYATEILHHHHHTTS--EEEaaaaaavababbb
1n7h_A_2251n7h   A233245LGRIKVGLQTKLFHHHHHHTS---EEaaaaaavababbx
1nzy_A_1731nzy   A174186EEAKDWGLVSRVYHHHHHHTS-S-EEaaaaaavababbb
1rpn_A_1901rpn   A198210VARIKLGKQQELRHHHHHTTS-S-EEaaaaaavababbx
1tyf_A_1761tyf   A177188PEAVEYGLVDSI.HHHHHHTS-SEE.aaaaaagababx.
1udb_*_2001udb   -204216IAQVAVGRRDSLAHHHHHHTSSS-EEaaaaaagababxx
1uyr_A_17801uyr   A17811793QIMYNNGVSHLTAHHHHHHTSSSEEEaaaaaavaxabbb
1vj0_A_3471vj0   A351363LELMESREALKVIHHHHHHTS-S-EEaaaaaavababbb
2reb_*_1222reb   -130142DALARSGAVDVIVHHHHHHS---EEEaaaaaavababbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 362
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 365
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE C - 367
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 368
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 369
1cdo_A_3551cdo   A     ZNZINC ION R - 369
1ei1_A_341ei1   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 42
1ei1_A_341ei1   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 43
1ei1_A_341ei1   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 46
1ei1_A_341ei1   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 47
1ei1_A_341ei1   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 49
1ei1_A_341ei1   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 50
1ei1_A_341ei1   A     GOLGLYCEROL E - 50
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE L - 208
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE M - 209
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE Y - 211
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE L - 223
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE N - 224
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE V - 225
1ek6_A_2081ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE F - 226
1f8f_A_3511f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 358
1f8f_A_3511f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 363
1f8f_A_3511f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 364
1f8f_A_3511f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 365
1kij_A_321kij   A     NOVNOVOBIOCIN D - 44
1kij_A_321kij   A     NOVNOVOBIOCIN N - 45
1kij_A_321kij   A     NOVNOVOBIOCIN A - 46
1kij_A_321kij   A     NOVNOVOBIOCIN D - 48
1kij_A_321kij   A     NOVNOVOBIOCIN E - 49
1n7h_A_2251n7h   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 225
1n7h_A_2251n7h   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 226
1n7h_A_2251n7h   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 228
1n7h_A_2251n7h   A     GDPGUANOSINE-5'-DIPHOSPHATE F - 245
1n7h_A_2251n7h   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 246
1rpn_A_1901rpn   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 190
1rpn_A_1901rpn   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 191
1rpn_A_1901rpn   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 193
1rpn_A_1901rpn   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 210
1rpn_A_1901rpn   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 211
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE L - 200
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE M - 201
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE Y - 203
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE L - 215
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE A - 216
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE I - 217
1udb_*_2001udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE F - 218
1vj0_A_3471vj0   A     ZNZINC ION K - 361

Clusters included in this Subclass
CLUSTER: HE.3.284
CLUSTER: HE.5.36
CLUSTER: HE.6.30
CLUSTER: HE.7.68