ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.1.1

Subclass Accession number: 347
Subclass: 5.1.1

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 9.8 +/- 11.5
Average RMSD (Å) : 1.000 +/- 0.307

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XXhXXXpph
(φψ)-conformation:	aappaapbb

Pattern:	[filmv]	x	x	x	x	x	x	x	x	x	x	[ADENQRT]	[hknqt]	[AIVY]	x
Conservation:	1.134	0.199	-0.115	-0.490	-1.882	-0.444	-0.231	-0.218	-0.195	0.227	-0.569	0.417	0.067	2.751	-0.650

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f7u_A_446	1f7u	A	458	472	VMIQDMQGKRINNYE	HHHHHHSS-TT--EE	aaaaaaabxaaxxbx
1g5t_A_140	1g5t	A	143	157	VISALNARPGHQTVI	HHHHHHTS-TT-EEE	aaaaaaaxwaaxxbb
1jpz_A_109	1jpz	A	126	140	LVQKWERLNADEHIE	HHHHHHT--TT--EE	aaaaaaaxxaabbbx
1m2o_A_134	1m2o	A	144	158	IITSLSLLPPNALIG	HHHHHHTS-TT-EEE	aaaaaaaxxaapxbb
1m32_A_65	1m32	A	70	84	EAVLGSALGPQDKVL	HHHHHHS--TT--EE	aaaaaaabxaaxbbx
1o4s_A_152	1o4s	A	152	166	LEEVEGLLVGKTKAV	HHHHHHT--TTEEEE	aaaaaaaxbaaxabb
1vec_A_246	1vec	A	249	263	MEDIILTLPKNRQIL	HHHHHHHS-TT-EEE	aaaaaaaxwaaxxbb
2trc_P_120	2trc	P	123	137	FLETIEKEQKVTTIV	HHHHHHHS-TT-EEE	aaaaaaaxpaaxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g5t_A_140	1g5t	A	MGMAGNESIUM ION	T - 159
1g5t_A_140	1g5t	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 159
1m32_A_65	1m32	A	MSESELENOMETHIONINE	G - 65
1m32_A_65	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 65
1m32_A_65	1m32	A	MSESELENOMETHIONINE	S - 66
1m32_A_65	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 66
1m32_A_65	1m32	A	MSESELENOMETHIONINE	Y - 67
1m32_A_65	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	Y - 67
1m32_A_65	1m32	A	MSESELENOMETHIONINE	A - 68
1m32_A_65	1m32	A	MSESELENOMETHIONINE	V - 69
1m32_A_65	1m32	A	PLPPYRIDOXAL-5'-PHOSPHATE	V - 69
1m32_A_65	1m32	A	MSESELENOMETHIONINE	E - 70
1m32_A_65	1m32	A	MSESELENOMETHIONINE	A - 71
1m32_A_65	1m32	A	MSESELENOMETHIONINE	L - 73
1m32_A_65	1m32	A	MSESELENOMETHIONINE	G - 74
1m32_A_65	1m32	A	MSESELENOMETHIONINE	L - 84
1m32_A_65	1m32	A	MSESELENOMETHIONINE	I - 85
1m32_A_65	1m32	A	MSESELENOMETHIONINE	V - 86
1o4s_A_152	1o4s	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 169
2trc_P_120	2trc	P	MSESELENOMETHIONINE	T - 134
2trc_P_120	2trc	P	MSESELENOMETHIONINE	T - 135

Clusters included in this Subclass

CLUSTER: HE.6.14