Logo
Information on SUBCLASS 5.1.1
Subclass Accession number: 5740
Subclass: 5.1.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 35

Average sequence ID (%) : 13.5 +/- 16.2
Average RMSD (Å) : 0.837 +/- 0.269

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXhXXpXXh
(φψ)-conformation: aappaapbb
Pattern: [filtvy]x[adeknqst]x[acilmtv][adegnpst][deknpqrs][dehknqsty]xx[afilpvy][afgiklmv]x
Conservation:1.930-1.3210.368-1.4240.3500.3630.1910.774-0.969-1.1631.082-0.122-0.058
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2o_A_1671a2o   A174186VLQPLPLSSPAVIHHTT--TT--EEEaaaaxwaaxpxbb
1b77_A_571b77   A6375ILSLVSDDAEISMHHTTS-TT-EEEEaaaabpaapxbbx
1b8p_A_1011b8p   A119131IDAVASRNIKVLVHHHHS-TT-EEEEaaaaxpaapbbbb
1bfd_*_3551bfd   -362374LNDMAPENAIYLNHHHHS-TT-EEEEaaaaxxaaxbbbb
1bs0_A_1081bs0   A116128IAAMMAKEDRIAAHHHH--TT-EEEEaaaabbaaxbbbb
1chd_*_1671chd   -174186VLQPLPLSSPAVIHHTT--TTS-EEEaaaaxxaaxwxbb
1czd_A_10571czd   A10631075ILSLVNDDAEISQHHTTS-TT-EEEEaaaabxaapbxbx
1ek0_A_921ek0   A105117LHEQASKDIIIALHHHHS-TT-EEEEaaaaxxaaxbbbx
1f14_A_1121f14   A122134LDKFAAEHTIFASHHHHS-TT-EEEEaaaapxaapbbbb
1fc4_A_1191fc4   A119131FETLLGAEDAIISHHHH--TT-EEEEaaaabbaabbbbb
1fmj_A_1461fmj   A149161LLAAVPPTEKRFVHHHHS-TTS--EEaaaaxxaabpxbb
1g16_A_1111g16   A118130VNEHANDEAQLLLHHHHS-TT--EEEaaaaxxaapxbbx
1g62_A_781g62   A8496LRNSLPDSVKIQRHHHHS-TTSEEEEaaaaxpaabxbbx
1hdh_A_1801hdh   A191203YLKERDQSRPFFAHHHTS-TTS-EEEaaaaxxaabxbbb
1iq0_A_4301iq0   A445457SMVKTEPKKQIDFHHHHS-TTS-EEEaaaaxpaaxxbbx
1iz9_A_981iz9   A116128LAEVAKKDVKVLVHHHHS-TT-EEEEaaaaxxaapxbbx
1jtk_A_871jtk   A93105ISELCTKDVIVVLHHHHS-TT-EEEEaaaabxaapxbbb
1lar_A_14981lar   A15071519VKACNPLDAGPMVHHHHS-TT---EEaaaaxpaaxxxxb
1m32_A_651m32   A7385LGSALGPQDKVLIHHHS--TT--EEEaaaabxaaxbbxb
1mwm_A_1491mwm   A156168VLQELDELDSLLIHHTTS-TT-EEEEaaaaxxaaxbxbb
1ni4_A_691ni4   A7586LEAGINPTDHLI.HHHHS-TTSEEE.aaaabxaaxbbb.
1nvm_A_1771nvm   A187199FKAVLKPETQVGMHHHHS-TTSEEEEaaaaxxaaxxbbb
1o9g_A_1901o9g   A200212LASALPAHAVIAVHHHHS-TT-EEEEaaaabxaaxbbbb
1ofu_A_2731ofu   A283295IEQFASEHATVKVHHHHS-TTSEEEEaaaaxxaabxbbb
1oiv_A_1021oiv   A109121LRDHADSNIVIMLHHHHS-TT-EEEEaaaabpaaxxbbx
1ols_A_931ols   A99110SAAALDNTDLVF.HHHTS-TTSEEE.aaaaxxaaxxbb.
1oth_A_2881oth   A290302TAKVAASDWTFLHHHHTS-TT-EEEEaaaaxxaapbbbb
1pox_A_3731pox   A380392VNKIAEPDAIYSIHHHH--TT-EEEEaaaaxxaaxbbbb
1pvv_A_2541pvv   A256268LVKHAKPDYMFMHHHHTS-TT-EEEEaaaaxpaaxbxbb
1qde_A_1801qde   A186198IFTLLPPTTQVVLHHHHS-TT-EEEEaaaaxpaaxxbbb
1rpm_A_10711rpm   A10801092VKSKSPPSAGPLVHHHHS-TTS--EEaaaaxpaaxxxxx
1vec_A_2461vec   A252264IILTLPKNRQILLHHHHS-TT-EEEEaaaaxwaaxxbbb
1yfo_A_4091yfo   A418430VKACNPQYAGAIVHHHHS-TTS--EEaaaaxpaabxpxx
4mdh_A_1054mdh   A115127LDKYAKKSVKVIVHHHHS-TT-EEEEaaaaxxaapbxbb
7mdh_A_1407mdh   A158170LNAVASKNVKVLVHHHHS-TT-EEEEaaaaxpaaxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bfd_*_3551bfd   *     CACALCIUM ION D - 360
1bfd_*_3551bfd   *     CACALCIUM ION N - 363
1bfd_*_3551bfd   *     CACALCIUM ION D - 364
1bfd_*_3551bfd   *     TPPTHIAMINE DIPHOSPHATE E - 375
1ek0_A_921ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER N - 120
1fc4_A_1191fc4   A     MSESELENOMETHIONINE F - 119
1fc4_A_1191fc4   A     MSESELENOMETHIONINE D - 132
1fmj_A_1461fmj   A     RTLRETINOL K - 162
1g16_A_1111g16   A     MSESELENOMETHIONINE N - 123
1g16_A_1111g16   A     MSESELENOMETHIONINE E - 125
1g16_A_1111g16   A     MSESELENOMETHIONINE A - 126
1g16_A_1111g16   A     MSESELENOMETHIONINE Q - 127
1g16_A_1111g16   A     MSESELENOMETHIONINE L - 128
1g16_A_1111g16   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 133
1jtk_A_871jtk   A     ZNZINC ION G - 87
1jtk_A_871jtk   A     THUTETRAHYDRODEOXYURIDINE G - 87
1jtk_A_871jtk   A     ZNZINC ION A - 88
1jtk_A_871jtk   A     ZNZINC ION C - 89
1jtk_A_871jtk   A     THUTETRAHYDRODEOXYURIDINE C - 89
1jtk_A_871jtk   A     ZNZINC ION R - 90
1m32_A_651m32   A     MSESELENOMETHIONINE G - 65
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 65
1m32_A_651m32   A     MSESELENOMETHIONINE S - 66
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 66
1m32_A_651m32   A     MSESELENOMETHIONINE Y - 67
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 67
1m32_A_651m32   A     MSESELENOMETHIONINE A - 68
1m32_A_651m32   A     MSESELENOMETHIONINE V - 69
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 69
1m32_A_651m32   A     MSESELENOMETHIONINE E - 70
1m32_A_651m32   A     MSESELENOMETHIONINE A - 71
1m32_A_651m32   A     MSESELENOMETHIONINE L - 73
1m32_A_651m32   A     MSESELENOMETHIONINE G - 74
1m32_A_651m32   A     MSESELENOMETHIONINE L - 84
1m32_A_651m32   A     MSESELENOMETHIONINE I - 85
1m32_A_651m32   A     MSESELENOMETHIONINE V - 86
1mwm_A_1491mwm   A     MGMAGNESIUM ION D - 170
1mwm_A_1491mwm   A     ADPADENOSINE-5'-DIPHOSPHATE D - 170
1mwm_A_1491mwm   A     ADPADENOSINE-5'-DIPHOSPHATE L - 171
1ni4_A_691ni4   A     MSESELENOMETHIONINE E - 69
1ni4_A_691ni4   A     MSESELENOMETHIONINE A - 70
1ni4_A_691ni4   A     MSESELENOMETHIONINE C - 71
1ni4_A_691ni4   A     MSESELENOMETHIONINE V - 73
1ni4_A_691ni4   A     MSESELENOMETHIONINE L - 75
1ni4_A_691ni4   A     MSESELENOMETHIONINE E - 76
1ni4_A_691ni4   A     MSESELENOMETHIONINE I - 86
1nvm_A_1771nvm   A     MPD2-METHYL-2,4-PENTANEDIOL M - 177
1nvm_A_1771nvm   A     MPD2-METHYL-2,4-PENTANEDIOL D - 179
1nvm_A_1771nvm   A     MNMANGANESE (II) ION H - 200
1nvm_A_1771nvm   A     OXLOXALATE ION H - 200
1o9g_A_1901o9g   A     MSESELENOMETHIONINE V - 209
1o9g_A_1901o9g   A     MSESELENOMETHIONINE I - 210
1o9g_A_1901o9g   A     MSESELENOMETHIONINE A - 211
1o9g_A_1901o9g   A     MSESELENOMETHIONINE V - 212
1oiv_A_1021oiv   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 124
4mdh_A_1054mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 107
4mdh_A_1054mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 111
4mdh_A_1054mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 127
7mdh_A_1407mdh   A     ZNZINC ION V - 170
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oiv_A_1021oiv   A AC1EDO BINDING SITE FOR CHAIN BN - 116

Clusters included in this Subclass
CLUSTER: HE.4.205
CLUSTER: HE.4.63
CLUSTER: HE.5.267
CLUSTER: HE.5.61
CLUSTER: HE.6.12
CLUSTER: HE.6.49
CLUSTER: HE.6.50
CLUSTER: HE.7.36
CLUSTER: HE.7.72