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Information on SUBCLASS 5.2.1
Subclass Accession number: 8554
Subclass: 5.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 15.8 +/- 19.3
Average RMSD (Å) : 0.837 +/- 0.293

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XhhXXpXXh
(φψ)-conformation: aappaapbb
Pattern: [adknqr][agkqrt][filtv][ADEKNRS][ADEKQS][acgiklmv][acilmv][deknpst][deknpqrs][DEHNSTY][afitv][agikltv][afilpvy][afgilmvw]x
Conservation:-0.606-0.7791.8290.6171.291-0.359-0.0390.438-0.1101.518-1.032-1.908-0.141-0.283-0.436
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8p_A_1011b8p   A117131KAIDAVASRNIKVLVHHHHHHS-TT-EEEEaaaaaaxpaapbbbb
1bdm_A_1021bdm   A113127RALAEVAKKDVKVLVHHHHHHS-TT-EEEEaaaaaaxpaapxbbb
1bfd_*_3551bfd   -360374DTLNDMAPENAIYLNHHHHHHS-TT-EEEEaaaaaaxxaaxbbbb
1bs0_A_1081bs0   A114128AVIAAMMAKEDRIAAHHHHHH--TT-EEEEaaaaaabbaaxbbbb
1civ_A_1361civ   A152166KALNAVASPNVKVMVHHHHHHS-TT-EEEEaaaaaabpaaxxbbx
1dhp_A_1681dhp   A171185NQIKELVSDDFVLLSHHHHHHS-TTSEEEEaaaaaabxaaxxbbx
1ixm_A_1071ixm   A119133HLFDQAVSRESENHLHHHHHHB-TTS--EEaaaaaaxxaabxxbb
1jtk_A_871jtk   A91105QVISELCTKDVIVVLHHHHHHS-TT-EEEEaaaaaabxaapxbbb
1lar_A_14981lar   A15051519RRVKACNPLDAGPMVHHHHHHS-TT---EEaaaaaaxpaaxxxxb
1ni4_A_691ni4   A7386VGLEAGINPTDHLI.HHHHHHS-TTSEEE.aaaaaabxaaxbbb.
1nvm_A_1771nvm   A185199RAFKAVLKPETQVGMHHHHHHS-TTSEEEEaaaaaaxxaaxxbbb
1ols_A_931ols   A97110VGSAAALDNTDLVF.HHHHHTS-TTSEEE.aaaaaaxxaaxxbb.
1oth_A_2881oth   A288302MKTAKVAASDWTFLHHHHHHTS-TT-EEEEaaaaaaxxaapbbbb
1pii_*_3391pii   -343357DTLREALPAHVAIWKHHHHHHS-TTSEEEEaaaaaaxpaaxxbbb
1pox_A_3731pox   A378392RAVNKIAEPDAIYSIHHHHHH--TT-EEEEaaaaaaxxaaxbbbb
1rpm_A_10711rpm   A10781092RQVKSKSPPSAGPLVHHHHHHS-TTS--EEaaaaaaxpaaxxxxx
1yfo_A_4091yfo   A416430KKVKACNPQYAGAIVHHHHHHS-TTS--EEaaaaaaxpaabxpxx
5mdh_A_1015mdh   A113127AALDKYAKKSVKVIVHHHHHHS-TT-EEEEaaaaaaxxaapbbbx
7mdh_A_1407mdh   A156170KALNAVASKNVKVLVHHHHHHS-TT-EEEEaaaaaaxpaaxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bdm_A_1021bdm   A     NAXBETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE I - 107
1bdm_A_1021bdm   A     NAXBETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Q - 111
1bdm_A_1021bdm   A     NAXBETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 127
1bfd_*_3551bfd   *     CACALCIUM ION D - 360
1bfd_*_3551bfd   *     CACALCIUM ION N - 363
1bfd_*_3551bfd   *     CACALCIUM ION D - 364
1bfd_*_3551bfd   *     TPPTHIAMINE DIPHOSPHATE E - 375
1civ_A_1361civ   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE N - 143
1civ_A_1361civ   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 146
1civ_A_1361civ   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 150
1civ_A_1361civ   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 166
1jtk_A_871jtk   A     ZNZINC ION G - 87
1jtk_A_871jtk   A     THUTETRAHYDRODEOXYURIDINE G - 87
1jtk_A_871jtk   A     ZNZINC ION A - 88
1jtk_A_871jtk   A     ZNZINC ION C - 89
1jtk_A_871jtk   A     THUTETRAHYDRODEOXYURIDINE C - 89
1jtk_A_871jtk   A     ZNZINC ION R - 90
1ni4_A_691ni4   A     MSESELENOMETHIONINE E - 69
1ni4_A_691ni4   A     MSESELENOMETHIONINE A - 70
1ni4_A_691ni4   A     MSESELENOMETHIONINE C - 71
1ni4_A_691ni4   A     MSESELENOMETHIONINE V - 73
1ni4_A_691ni4   A     MSESELENOMETHIONINE L - 75
1ni4_A_691ni4   A     MSESELENOMETHIONINE E - 76
1ni4_A_691ni4   A     MSESELENOMETHIONINE I - 86
1nvm_A_1771nvm   A     MPD2-METHYL-2,4-PENTANEDIOL M - 177
1nvm_A_1771nvm   A     MPD2-METHYL-2,4-PENTANEDIOL D - 179
1nvm_A_1771nvm   A     MNMANGANESE (II) ION H - 200
1nvm_A_1771nvm   A     OXLOXALATE ION H - 200
5mdh_A_1015mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 104
5mdh_A_1015mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 107
5mdh_A_1015mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 111
5mdh_A_1015mdh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 127
7mdh_A_1407mdh   A     ZNZINC ION V - 170

Clusters included in this Subclass
CLUSTER: HE.4.54
CLUSTER: HE.6.10