ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.2.2

Subclass Accession number: 5746
Subclass: 5.2.2

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
SCOP : 52046 (>50 %) 52047 (>50 %) 52048 (>50 %)

Number of loops: 11

Average sequence ID (%) : 22.3 +/- 24.1
Average RMSD (Å) : 0.618 +/- 0.289

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	pXXXphXph
(φψ)-conformation:	aapaapabb

Pattern:	[AILM]	[acdnpsv]	x	[AILMT]	[ilv]	[aeknr]	[aekst]	[dknq]	x	[akst]	[ilv]	x	[DEHKRT]	[FILV]
Conservation:	0.884	-1.504	-1.232	-0.104	1.266	-0.423	-0.853	-0.843	-0.542	0.140	1.305	-0.198	0.367	1.737

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4y_A_101	1a4y	A	104	117	LSSTLRTLPTLQEL	HHHHHHH-TT--EE	aaaaaaabaaxabb
1a4y_A_214	1a4y	A	218	231	LCGIVASKASLREL	HHHHHHH-TT--EE	aaaaaaaxaaxabb
1a4y_A_386	1a4y	A	389	402	LAATLLANHSLREL	HHHHHHH-----EE	aaaaaaaxaapabb
1a4y_A_44	1a4y	A	47	60	ISSALRVNPALAEL	HHHHHHT-S---EE	aaaaaaaxaapabb
1hzd_A_107	1hzd	A	114	127	AVDALKSDKKVRTI	HHHHHHH-SS-SEE	aaaaaaapaapabb
1io0_A_296	1io0	A	302	315	IANMLEKNTTLLKF	HHHHHHH-SS--EE	aaaaaaabaaxabb
1m32_A_119	1m32	A	122	135	IDAILNADPTISHI	HHHHHHH-TT--EE	aaaaaaabaaxabb
1pgv_A_338	1pgv	A	344	357	MMMAIEENESLLRV	HHHHHHH-SS--EE	aaaaaaaxaapabb
2bnh_*_100	2bnh	-	100	113	LPSTLRSLPTLREL	HHHHHHH-TT--EE	aaaaaaabaaxabb
2bnh_*_208	2bnh	-	214	227	LCGIVASQASLREL	HHHHHHH-TT--EE	aaaaaaaxaapabb
7aat_A_107	7aat	A	116	129	ANFLQRFFKFSRDV	HHHHHHH-TT--EE	aaaaaaaxaabaxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1m32_A_119	1m32	A	MSESELENOMETHIONINE	I - 122
1m32_A_119	1m32	A	MSESELENOMETHIONINE	I - 135
7aat_A_107	7aat	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 107
7aat_A_107	7aat	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 108
7aat_A_107	7aat	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 109
7aat_A_107	7aat	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 110
7aat_A_107	7aat	A	PLPPYRIDOXAL-5'-PHOSPHATE	L - 112

Clusters included in this Subclass

CLUSTER: HE.4.177

CLUSTER: HE.6.43