Information on SUBCLASS 5.2.5 |
Subclass Accession number: 5749
Subclass: 5.2.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.1 (>50 %) 1.1.1 (>50 %) 1.1.1.373.2 (>50 %) 3.2.2 (>50 %) 3.2.2.22 GO : GO:0016614 (>50 %) GO:0016615 (>50 %) GO:0016616 (>50 %) GO:0030060 (>50 %) SCOP : 51734 (>50 %) 51735 (>50 %) 51848 (>50 %) 56370 (>50 %) 56371 (>50 %) 56372 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 21.7 +/- 18.4 Average RMSD (Å) : 0.400 +/- 0.100 Consensus geometry
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Consensus Sequence: | XXpPhhpXh |
(φψ)-conformation: | aapaapabb |
Pattern: | [GV] | [QSW] | [APQ] | x | [AGS] | [KL] | x | [LM] | [AKL] | [AKN] | [DES] | [P] | [FL] | [LMV] | [DKS] | x | [LV] | [TV] | [L] | x |
Conservation: | -0.271 | -0.531 | -0.531 | -0.894 | -0.096 | -0.387 | -0.387 | 0.835 | -0.894 | -0.604 | 0.122 | 3.315 | 0.330 | 0.267 | -0.314 | -0.967 | 0.439 | 0.252 | 1.356 | -1.039 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1g5t_A_98 | 1g5t | A | 108 | 127 | VWQHGKRMLADPLLDMVVLD | HHHHHHHHTT-TT-SEEEEE | aaaaaaaaaaxaaxabbbbx |
1hye_A_11 | 1hye | A | 13 | 32 | GSATALLLAKEPFMKDLVLI | HHHHHHHHHT-TT--EEEEE | aaaaaaaaaaxaaxabbbbb |
1mld_A_13 | 1mld | A | 13 | 32 | GQPLSLLLKNSPLVSRLTLY | HHHHHHHHHT-TT-SEEEEE | aaaaaaaaaaxaababbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g5t_A_98 | 1g5t | A | MGMAGNESIUM ION | D - 127 |
1g5t_A_98 | 1g5t | A | ATPADENOSINE-5'-TRIPHOSPHATE | D - 127 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | R - 11 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | V - 12 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | G - 13 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | I - 32 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | G - 33 |
Clusters included in this Subclass |
CLUSTER: HE.7.150 |