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Information on SUBCLASS 5.2.8
Subclass Accession number: 5752
Subclass: 5.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 10.5 +/- 11.4
Average RMSD (Å) : 0.700 +/- 0.346

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXpXphpph
(φψ)-conformation: aapaapabb
Pattern: xx[AGK][LV][ADK][AQR]x[KMT]x[DS][EKP][EKR][CV][NR][NRT][IV][IV][CIV]x
Conservation:-0.824-1.252-0.7170.866-0.931-0.395-1.038-0.717-1.1451.285-0.0740.5690.5701.072-0.1811.7481.7400.355-0.931
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hzd_A_1071hzd   A112130SKAVDALKSDKKVRTIIIRHHHHHHHHH-SS-SEEEEEaaaaaaaaapaapabbbbb
1j8f_A_641j8f   A6482LEGVARYMQSERCRRVICLHHHHHHHHHSTT---EEEEaaaaaaaaaxaaxabbbbb
1nhp_*_1331nhp   -137155AIKLKQKTVDPEVNNVVVIHHHHHHHHT-TT--EEEEEaaaaaaaaaxaaxabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nhp_*_1331nhp   *     FADFLAVIN-ADENINE DINUCLEOTIDE G - 133

Clusters included in this Subclass
CLUSTER: HE.5.336