Information on SUBCLASS 5.2.8 |
Subclass Accession number: 5752
Subclass: 5.2.8 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 10.5 +/- 11.4 Average RMSD (Å) : 0.700 +/- 0.346 Consensus geometry
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Consensus Sequence: | XXpXphpph |
(φψ)-conformation: | aapaapabb |
Pattern: | x | x | [AGK] | [LV] | [ADK] | [AQR] | x | [KMT] | x | [DS] | [EKP] | [EKR] | [CV] | [NR] | [NRT] | [IV] | [IV] | [CIV] | x |
Conservation: | -0.824 | -1.252 | -0.717 | 0.866 | -0.931 | -0.395 | -1.038 | -0.717 | -1.145 | 1.285 | -0.074 | 0.569 | 0.570 | 1.072 | -0.181 | 1.748 | 1.740 | 0.355 | -0.931 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1hzd_A_107 | 1hzd | A | 112 | 130 | SKAVDALKSDKKVRTIIIR | HHHHHHHHH-SS-SEEEEE | aaaaaaaaapaapabbbbb |
1j8f_A_64 | 1j8f | A | 64 | 82 | LEGVARYMQSERCRRVICL | HHHHHHHHHSTT---EEEE | aaaaaaaaaxaaxabbbbb |
1nhp_*_133 | 1nhp | - | 137 | 155 | AIKLKQKTVDPEVNNVVVI | HHHHHHHHT-TT--EEEEE | aaaaaaaaaxaaxabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1nhp_*_133 | 1nhp | * | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 133 |
Clusters included in this Subclass |
CLUSTER: HE.5.336 |