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Information on SUBCLASS 5.24.2
Subclass Accession number: 5800
Subclass: 5.24.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 8.3 +/- 11.6
Average RMSD (Å) : 0.700 +/- 0.173

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hpchXhpXp
(φψ)-conformation: aapaappbb
Pattern: [HVW][AEL]x[AFM][KQS][DN][PV]x[FMY][ENY][ALT][KQR]
Conservation:-0.839-1.279-0.949-0.6190.1522.0860.920-0.0790.812-0.509-0.6190.922
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f6d_A_181f6d   A2132HALAKDPFFEAKHHHHH-TT--EEaaaaaxaabbbb
1ivy_A_1521ivy   A161172VLVMQDPSMNLQHHHTT-TTS-EEaaaaabaaxxxa
1q4g_A_1391q4g   A139150WESFSNVSYYTRHHHHH-TTB-EEaaaaaxaaxxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f6d_A_181f6d   A     MSESELENOMETHIONINE P - 18
1f6d_A_181f6d   A     MSESELENOMETHIONINE L - 19
1f6d_A_181f6d   A     MSESELENOMETHIONINE V - 20
1f6d_A_181f6d   A     MSESELENOMETHIONINE H - 21
1f6d_A_181f6d   A     MSESELENOMETHIONINE F - 28
1f6d_A_181f6d   A     MSESELENOMETHIONINE F - 29
1f6d_A_181f6d   A     MSESELENOMETHIONINE E - 30
1f6d_A_181f6d   A     MSESELENOMETHIONINE A - 31
1q4g_A_1391q4g   A     GOLGLYCEROL W - 139
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE E - 140
1q4g_A_1391q4g   A     GOLGLYCEROL E - 140
1q4g_A_1391q4g   A     GOLGLYCEROL S - 143
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE N - 144
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE S - 146
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 147
1q4g_A_1391q4g   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 148

Clusters included in this Subclass
CLUSTER: HE.6.244