Information on SUBCLASS 5.24.2 |
Subclass Accession number: 5800
Subclass: 5.24.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 8.3 +/- 11.6 Average RMSD (Å) : 0.700 +/- 0.173 Consensus geometry
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Consensus Sequence: | hpchXhpXp |
(φψ)-conformation: | aapaappbb |
Pattern: | [HVW] | [AEL] | x | [AFM] | [KQS] | [DN] | [PV] | x | [FMY] | [ENY] | [ALT] | [KQR] |
Conservation: | -0.839 | -1.279 | -0.949 | -0.619 | 0.152 | 2.086 | 0.920 | -0.079 | 0.812 | -0.509 | -0.619 | 0.922 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f6d_A_18 | 1f6d | A | 21 | 32 | HALAKDPFFEAK | HHHHH-TT--EE | aaaaaxaabbbb |
1ivy_A_152 | 1ivy | A | 161 | 172 | VLVMQDPSMNLQ | HHHTT-TTS-EE | aaaaabaaxxxa |
1q4g_A_139 | 1q4g | A | 139 | 150 | WESFSNVSYYTR | HHHHH-TTB-EE | aaaaaxaaxxxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | P - 18 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | L - 19 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | V - 20 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | H - 21 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | F - 28 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | F - 29 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | E - 30 |
1f6d_A_18 | 1f6d | A | MSESELENOMETHIONINE | A - 31 |
1q4g_A_139 | 1q4g | A | GOLGLYCEROL | W - 139 |
1q4g_A_139 | 1q4g | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 140 |
1q4g_A_139 | 1q4g | A | GOLGLYCEROL | E - 140 |
1q4g_A_139 | 1q4g | A | GOLGLYCEROL | S - 143 |
1q4g_A_139 | 1q4g | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 144 |
1q4g_A_139 | 1q4g | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 146 |
1q4g_A_139 | 1q4g | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 147 |
1q4g_A_139 | 1q4g | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 148 |
Clusters included in this Subclass |
CLUSTER: HE.6.244 |