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PDB code:

Information on SUBCLASS 5.3.1

Subclass Accession number: 353 Subclass: 5.3.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 11 Average sequence ID (%) : 11.2 +/- 12.1 Average RMSD (Å) : 0.991 +/- 0.342 Consensus geometry d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e58_A_31	1e58	A	41	55	GKLLKEEGYSFDFAY	HHHHHHTT---SEEE	aaaaaaavxbbabbb
1f2d_A_174	1f2d	A	183	197	INQEVELGIKFDKIV	HHHHHHHT---SEEE	aaaaaaavbbxabbb
1gud_A_96	1gud	A	96	110	MDNLKKAGGNVEAFV	HHHHHHTT---SEEE	aaaaaaavbbbabbb
1ihu_A_501	1ihu	A	511	525	QADLERAGIHPWGWI	HHHHHHTT----EEE	aaaaaaavbbpabbb
1iq0_A_213	1iq0	A	224	238	MATMHALNARYDLLV	HHHHHHTT---SEEE	aaaaaaavxbbabbb
1mhm_A_96	1mhm	A	100	114	LRLAETLSLKVQDVR	HHHHHHTT----EEE	aaaaaaavbbxabbb
1qba_*_507	1qba	-	521	535	AQMHKEAGQPIKTWH	HHHHHHHT---S-EE	aaaaaaavbppabbb
1s0a_A_112	1s0a	A	124	138	LQYWQAKGEARQRFL	HHHHHHHT----EEE	aaaaaaavbxbaxbb
1ufa_A_155	1ufa	A	167	181	STYRRHFAKDPTGFW	HHHHHHHSS---BEE	aaaaaaalbxxabbx
1vgy_A_143	1vgy	A	147	161	VDVLKARDELIDYCI	HHHHHHTT---SEEE	aaaaaaalxxbabbb
1zin_*_90	1zin	-	97	111	ETMLADIGRKLDYVI	HHHHHHTT----EEE	aaaaaaavbbxabbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f2d_A_174	1f2d	A	PLPPYRIDOXAL-5'-PHOSPHATE	C - 199
1f2d_A_174	1f2d	A	PLPPYRIDOXAL-5'-PHOSPHATE	C - 200
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 501
1ihu_A_501	1ihu	A	MGMAGNESIUM ION	T - 502
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 502
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	P - 503
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 527
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 528
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 529
1s0a_A_112	1s0a	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	G - 112
1s0a_A_112	1s0a	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	S - 113
1s0a_A_112	1s0a	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	V - 114
1s0a_A_112	1s0a	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	V - 116
1ufa_A_155	1ufa	A	MSESELENOMETHIONINE	A - 160
1ufa_A_155	1ufa	A	MSESELENOMETHIONINE	T - 164
1ufa_A_155	1ufa	A	MSESELENOMETHIONINE	W - 181
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	K - 145
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	V - 146
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	V - 147
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	V - 149
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	L - 150
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	K - 151
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	R - 153
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	E - 155
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	L - 156
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	I - 157
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	D - 158
1vgy_A_143	1vgy	A	MSESELENOMETHIONINE	V - 162
1zin_*_90	1zin	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	Q - 92

Clusters included in this Subclass

CLUSTER: HE.5.117

CLUSTER: HE.5.24

CLUSTER: HE.7.19

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